View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_high_47 (Length: 282)
Name: NF20496_high_47
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 20514242 - 20514492
Alignment:
| Q |
17 |
tccttctcctttgactttgtttgataagatattataatttgcacacttaagtaaacattagaggataaattattctcttatattgttatcctcaaaacat |
116 |
Q |
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| T |
20514242 |
tccttcttctttgactttgtttgataagatattataatatgcacacttaagtaaacattagaggataaattattcttttatattgttatcctcaaaacat |
20514341 |
T |
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| Q |
117 |
caagattaggaactgtacctcgaccaattaggttccaacaagagtgagaagagacaaataggnnnnnnntaaagttaatatactgttcaatacgagagaa |
216 |
Q |
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| T |
20514342 |
caagattaggaactgtacctcgaccaatttggttccaacaagagtgagaagagagaaataggaaaaaaataaatttaatatactgttcaatacgagagaa |
20514441 |
T |
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| Q |
217 |
gaaagatatataaaaaatgctgattaattttaaaaatacaagatttcctag |
267 |
Q |
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| T |
20514442 |
gaaatatataaaaaaaatgttgattaattttaaaagtacaagatttcctag |
20514492 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 29050355 - 29050437
Alignment:
| Q |
25 |
ctttgactttgtttgataagatattata-atttgcacacttaagtaaacattagaggataaattattctcttatattgttatc |
106 |
Q |
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| T |
29050355 |
ctttgactttatttgatatgatattaaatatttgcccacttaagcaaacgttggaggataaattattctcttataatgttatc |
29050437 |
T |
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