View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20496_high_49 (Length: 274)
Name: NF20496_high_49
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_high_49 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 10971355 - 10971606
Alignment:
| Q |
1 |
gtcattcgacgtggtgtggctgtcgtcgtcggcggcggagaaaacggcggcggtgtggcgcggagatttgccgggaaaaacgaaaggggaaaattgaaga |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10971355 |
gtcattcgacgtgatgtggctgtcgtcgtcatcggcggagaaaacggcggcggtgtggcgcggagatttgccgggaaaaacgaaagggggaaattgaaga |
10971454 |
T |
|
| Q |
101 |
gaaacggttacgtttggaaagaagcgcgtgttattgttaaagttgaatgtgcgttgaatacgaatgcgttggatagttgaacatgaagttgctagtgact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10971455 |
gaaacggttacgtttggaaagaagcgcgtgttattgttaaagttgaatgtgcgttgaatacgaatgcgttggatagttgaacatgaagttgctagtgact |
10971554 |
T |
|
| Q |
201 |
gtgttattgttgccattggtaactaactcaaactatgctatgcagcttagct |
252 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10971555 |
gggttattgttgccattggtaactaactcaaactatgctatgcagcttagct |
10971606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University