View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_high_53 (Length: 261)
Name: NF20496_high_53
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_high_53 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 2621780 - 2622028
Alignment:
| Q |
1 |
cactgcttatgctttcaacacacgtcctgttactcgacacccttgtcagaagccttttgtgttttacctttcaaaagcaaaattcaattctacaatacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621780 |
cactgcttatgctttcaacacacgtcctgttactcgacacccttgtcagaagccttttgtgttttacctttcaaaagcaaaattcaattctacaatacaa |
2621879 |
T |
|
| Q |
101 |
cagacagtgagtgaatatgaaaaacatcgtgttcctcatccggaatgccgatggaaaatggctaatccttctgctcttgacaaagttgtcgtatataaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621880 |
cagacagtgagtgaatatgaaaaacatcgtgttcctcatccggaatgccgatggaaaatggctaatccttctgctcttgacaaagttgtcgtatataaga |
2621979 |
T |
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| Q |
201 |
agccagacccgcatctatgggatagagtacgttcttcttctctgatatt |
249 |
Q |
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| T |
2621980 |
agccagacccgcatctatgggatagagtacgttcttcttctctgatatt |
2622028 |
T |
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Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 41316867 - 41316639
Alignment:
| Q |
1 |
cactgcttatgctttcaacacacgtcctgttactcgacacccttgtcagaagccttttgtgttttacctttcaaaagcaaaattcaattctacaatacaa |
100 |
Q |
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|||||| ||||| |||||||| ||||| |||| ||| | || ||||||||||||||||| |||||| | ||||| ||||||| |||| ||||| | || |
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| T |
41316867 |
cactgcatatgcattcaacacgcgtccggttagccgaaatccatgtcagaagccttttgtattttacttctcaaaggcaaaatacaatgatacaacagaa |
41316768 |
T |
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| Q |
101 |
cagacagtgagtgaatatgaaaaacatcgtgttcctcatccggaatgccgatggaaaatggctaatccttctgctcttgacaaagttgtcgtatataaga |
200 |
Q |
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| T |
41316767 |
caaacactgactgaatatgaaaggcatcgtgttcctcacccagaatgccggtggaagatggccaatccttcttctgttgacagagtggaggtatataaga |
41316668 |
T |
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| Q |
201 |
agccagacccgcatctatgggatagagta |
229 |
Q |
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||||||| || |||||||||||||||||| |
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| T |
41316667 |
agccagatccacatctatgggatagagta |
41316639 |
T |
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