View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_high_55 (Length: 249)
Name: NF20496_high_55
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_high_55 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 13014148 - 13013935
Alignment:
| Q |
9 |
gaagaatattgggttgatcctattttgaatttgtatttttgtatcaagtgaaatcagaatataaataattgatgaagagttgggacccctatatactgta |
108 |
Q |
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| T |
13014148 |
gaagaagattaggttgatcctattttgaatttgtatttttgtatcaagtgaaatcagaatataaataattgatgaagggttgggacccctatatactgca |
13014049 |
T |
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| Q |
109 |
ggtcttttttaggaactttctcatatataaggtcccttcgcgtcagaattttttcaatcgttaggttatagttgattcatatagtgttggtgtgggatat |
208 |
Q |
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| T |
13014048 |
ggtcttttctaggaagtttctcatatataaggtcccttcgcgtcataattttttcaattgttaggttatagt---------tagtgttggtgtgggatat |
13013958 |
T |
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| Q |
209 |
gtggaaagggttggagccggtgg |
231 |
Q |
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| T |
13013957 |
gtggaaagggttggagccggtgg |
13013935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 13085525 - 13085312
Alignment:
| Q |
9 |
gaagaatattgggttgatcctattttgaatttgtatttttgtatcaagtgaaatcagaatataaataattgatgaagagttgggacccctatatactgta |
108 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
13085525 |
gaagaagattaggttgatcctattttgaatttgtatttttgtatcaagtgaaatcagaatataaataattgatgaagagttgggacccctaaatactgca |
13085426 |
T |
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| Q |
109 |
ggtcttttttaggaactttctcatatataaggtcccttcgcgtcagaattttttcaatcgttaggttatagttgattcatatagtgttggtgtgggatat |
208 |
Q |
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| T |
13085425 |
ggtcttttctaggaaatttctcatatataaggtcccttcgcgtcataattttttcaatcgttaggttatagt---------taatgttggtgtgggatat |
13085335 |
T |
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| Q |
209 |
gtggaaagggttggagccggtgg |
231 |
Q |
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| T |
13085334 |
gtggaaagggttggagccggtgg |
13085312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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