View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_high_78 (Length: 202)
Name: NF20496_high_78
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_high_78 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 41337796 - 41337631
Alignment:
| Q |
19 |
aacctggcaattccaccctataagactgatttaccttggcaagattagacttaattccaatattccactaacagcacctaattcattcccaaaaattcca |
118 |
Q |
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| T |
41337796 |
aacctggcaattccaccctataagactgatttaccttggcaagattagacttaattccaatattccactaacaacacctaattcattcccaaaaattcca |
41337697 |
T |
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| Q |
119 |
aaaacctctatcaccataatggctgaacccgtggcatcaaaagcaacagtaactaatagtattaag |
184 |
Q |
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| T |
41337696 |
aaaacctctatcaccataatggctgaacccgtggcatcaaaagcaacagtaattaatagtattaag |
41337631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 24 - 163
Target Start/End: Complemental strand, 41327559 - 41327414
Alignment:
| Q |
24 |
ggcaattccaccctataagactgatttaccttggcaagattagacttaattccaatattccactaacag------cacctaattcattcccaaaaattcc |
117 |
Q |
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| T |
41327559 |
ggcaattccaccctataagactgatttaccttggcaagattagacttaattccaatattccactaacatgaacaacacctaattcattcccaaaaattcc |
41327460 |
T |
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| Q |
118 |
aaaaacctctatcaccataatggctgaacccgtggcatcaaaagca |
163 |
Q |
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| T |
41327459 |
aaaaacctctatcaccataatgggtgaacccgtggcatcaaaagca |
41327414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 5e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 20916375 - 20916209
Alignment:
| Q |
24 |
ggcaattccaccctataagactgatttaccttggcaagattagacttaattccaatattccacta------acagcacctaattcattcccaaaaattcc |
117 |
Q |
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| T |
20916375 |
ggcaattccaccctataagactcatttaccttggcaagattagacttaattccaatattccactatcatgaacagcacctaattcattcccacaaattct |
20916276 |
T |
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| Q |
118 |
aaaaacctctatcaccataatggctgaacccgtggcatcaaaagcaacagtaactaatagtattaag |
184 |
Q |
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| T |
20916275 |
aaaaacctctatcattataatggctgaacccgtggcatcaaaagcaacagtaactaatagtattaag |
20916209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 20926316 - 20926257
Alignment:
| Q |
19 |
aacctggcaattccaccctataagactgatttaccttggcaagattagacttaattccaa |
78 |
Q |
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| T |
20926316 |
aacctggcaattccaccctataagactgatttaccttggcaagattagacttaattccaa |
20926257 |
T |
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