View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_high_9 (Length: 503)
Name: NF20496_high_9
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 34 - 499
Target Start/End: Original strand, 24268085 - 24268548
Alignment:
| Q |
34 |
ccttctctcgctcgactttcccactcctaatgccttctttagttttgcccacccttacgagaaacatgcccacacacattaaacacgcaagatggaagaa |
133 |
Q |
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| T |
24268085 |
ccttctctcgctcgactttcccactcctaatgccttctttagttttgctcacccttacgagaaacatgcccacacacattaaacacgcaagatggaagaa |
24268184 |
T |
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| Q |
134 |
gagttaccagaccatacaatgatacaccttcgactgcgannnnnnnnnnnnctttgacaatgggtgaaaggtctctatggaattaagttttgttcttgaa |
233 |
Q |
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|||| |||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
24268185 |
gagtgaccagaccatacaatgatacaccttcaactgcgaagagagagagagctttgacaatggttgaaaggtctctatggaaataagttttgttcttgaa |
24268284 |
T |
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| Q |
234 |
tttcaatttgatccaagtttgtgataaatttcttatgaaattgttgatgagtttttctttttctcttatattcagttgcatttccctctctgtgtattgc |
333 |
Q |
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| T |
24268285 |
tttcaatttgatccaagtttgtgataaatttcttatgaaattgttgatgagtttttctttttcccttattttcagttacatttccctct--gtgtattgc |
24268382 |
T |
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| Q |
334 |
ttgcattttcacttcttcttggccttgaaattaattttaatattgtactgaaaattggcccactgtgaaaactcgtttgacataccaacgccaactcact |
433 |
Q |
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| T |
24268383 |
ttgcattttcacttcttcttggccttgaaattaattttaatattgtactgaaaattggcccactgtgaaaactcgtttgacagaccaacgccaactcact |
24268482 |
T |
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| Q |
434 |
cacctctaatagggtataaagcacttgcttctgttgatagctgtttttagatgaccaagagcaatg |
499 |
Q |
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| T |
24268483 |
cacctctaataggttataaagcacttgcttctgttgatagctgtttttagatgaccaagagcaatg |
24268548 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 445
Target Start/End: Original strand, 24683075 - 24683121
Alignment:
| Q |
399 |
tgaaaactcgtttgacataccaacgccaactcactcacctctaatag |
445 |
Q |
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| T |
24683075 |
tgaaaactcagttgacatactaacgccaactcactcacctctaatag |
24683121 |
T |
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