View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20496_low_1 (Length: 806)

Name: NF20496_low_1
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20496_low_1
NF20496_low_1
[»] chr6 (13 HSPs)
chr6 (256-513)||(4804081-4804335)
chr6 (3-125)||(4842372-4842494)
chr6 (1-69)||(4794200-4794268)
chr6 (256-368)||(4805366-4805478)
chr6 (200-363)||(4842058-4842214)
chr6 (354-442)||(4797761-4797849)
chr6 (685-788)||(4797972-4798074)
chr6 (723-782)||(4803905-4803964)
chr6 (723-782)||(10779297-10779356)
chr6 (453-517)||(4819651-4819715)
chr6 (683-783)||(4829301-4829399)
chr6 (361-446)||(4815114-4815199)
chr6 (357-411)||(10775835-10775889)
[»] chr5 (1 HSPs)
chr5 (722-756)||(19327181-19327215)
[»] chr7 (1 HSPs)
chr7 (409-476)||(3665212-3665277)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 4e-37; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 256 - 513
Target Start/End: Complemental strand, 4804335 - 4804081
Alignment:
Q  256 ccgcatttgatcacaattatccacaataataaggatcaaaacgtgaccaaaacttcactgtgactgtaatttaaaacgatcaaaatagcattcgttggat 355  Q
    ||||||||| |||| ||| ||||||||| ||| |||||||||||||| |||||||||  |||| ||  | ||||||||| |||| |||| || | |  ||    
T  4804335 ccgcatttggtcacgattctccacaatattaacgatcaaaacgtgacaaaaacttcatcgtgattgcta-ttaaaacgaccaaattagcttttgctccat 4804237  T
Q  356 aattgtatttactgatacatcttaacaccagtgtggatatgttaggaaaggaaaaaatggt-aagatttgctgcattggtgctggatatgtaggggaggg 454  Q
    ||||||||| ||| |||||| | |||||||||||||||| ||||||||| |||| |||||| |||||||||||||||| | || |||||||| ||||  |    
T  4804236 aattgtattcactaatacatttgaacaccagtgtggataggttaggaaa-gaaagaatggtgaagatttgctgcattgatactagatatgtaaggga--g 4804140  T
Q  455 tccaacaatgacagtcattgcatcaagatgtccatccattcaagtagttgtcgtcgata 513  Q
    ||||| ||| |||||||||| ||  ||||||||||||||||||| || |||||| ||||    
T  4804139 tccaataataacagtcattgtatttagatgtccatccattcaagcagctgtcgttgata 4804081  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 4842494 - 4842372
Alignment:
Q  3 atttaccttgtaccccgactcttaccacgtacaaaagagaattaagaaccaagcgactatgagttatcttgtagacctggaagtttttcacctaatcgtt 102  Q
    ||||| |||||| || ||||| ||||||| |||||| |||||||||||  ||| |||||||||| ||||| ||||||||||||||||||||||||| |||    
T  4842494 atttagcttgtatccagactcgtaccacgcacaaaaaagaattaagaattaagtgactatgagtcatcttatagacctggaagtttttcacctaattgtt 4842395  T
Q  103 atcaatgattgcatgtgttatat 125  Q
    || ||||||||||||||||||||    
T  4842394 attaatgattgcatgtgttatat 4842372  T

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Target: chr6; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4794268 - 4794200
Alignment:
Q  1 ttatttaccttgtaccccgactcttaccacgtacaaaagagaattaagaaccaagcgactatgagttat 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4794268 ttatttaccttgtaccccgactcttaccacgtacaaaagagaattaagaaccaagcgactatgagttat 4794200  T

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Target: chr6; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 256 - 368
Target Start/End: Complemental strand, 4805478 - 4805366
Alignment:
Q  256 ccgcatttgatcacaattatccacaataataaggatcaaaacgtgaccaaaacttcactgtgactgtaatttaaaacgatcaaaatagcattcgttggat 355  Q
    ||||||||||||||| || ||||||||| |||||||||||| ||||||||||||||||| ||||| | |||||||||||||||| || | ||||||| ||    
T  4805478 ccgcatttgatcacagttctccacaatagtaaggatcaaaatgtgaccaaaacttcactttgactattatttaaaacgatcaaactatctttcgttgcat 4805379  T
Q  356 aattgtatttact 368  Q
     ||||||||||||    
T  4805378 tattgtatttact 4805366  T

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Target: chr6; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 200 - 363
Target Start/End: Complemental strand, 4842214 - 4842058
Alignment:
Q  200 atgaccatcatatgtgccgtgaaactacaatgcgatcactattaaggcggcataggccgcatttgatcacaattatccacaataataaggatcaaaacgt 299  Q
    ||||||||||| || || ||||||||||||||||||||  ||| ||||||||| |||| ||||||||||||| | || | |||||||||||| |          
T  4842214 atgaccatcatctgagctgtgaaactacaatgcgatcataattgaggcggcatcggccacatttgatcacaactctc-agaataataaggatta------ 4842122  T
Q  300 gaccaaaacttcactgtgactgtaatttaaaacgatcaaaatagcattcgttggataattgtat 363  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| ||| ||||||    
T  4842121 gaccaaaacttcactgtgattgttatttaaaacgatcaaaatagcattcattgcatacttgtat 4842058  T

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Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 354 - 442
Target Start/End: Original strand, 4797761 - 4797849
Alignment:
Q  354 ataattgtatttactgatacatcttaacaccagtgtggatatgttaggaaaggaaaaaatggtaagatttgctgcattggtgctggata 442  Q
    ||||||||||||| |||||||| | ||||||| |||||||| |||||||||||||||| ||  ||||||||||||||||||||||||||    
T  4797761 ataattgtatttattgatacatttgaacaccactgtggataggttaggaaaggaaaaattgtgaagatttgctgcattggtgctggata 4797849  T

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Target: chr6; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 685 - 788
Target Start/End: Original strand, 4797972 - 4798074
Alignment:
Q  685 ggtcttgatgaagtagtttaagcaatttcgtggcaaaaaccttttcttcagcactgatgttgagaaacatgtcaatgaagctgacattgtgtttgtatcc 784  Q
    ||||||||||| |||||  ||||||| ||| ||||| |||||||||||||||||||||||| | ||||||||| ||||||||||||  |||||||||||     
T  4797972 ggtcttgatgatgtagta-aagcaatatcgcggcaagaaccttttcttcagcactgatgttaaaaaacatgtccatgaagctgacacagtgtttgtatct 4798070  T
Q  785 atca 788  Q
    ||||    
T  4798071 atca 4798074  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 723 - 782
Target Start/End: Complemental strand, 4803964 - 4803905
Alignment:
Q  723 accttttcttcagcactgatgttgagaaacatgtcaatgaagctgacattgtgtttgtat 782  Q
    ||||| |||||| |||||||||||| ||||||||| ||||||||||||||||||||||||    
T  4803964 accttgtcttcaacactgatgttgaaaaacatgtctatgaagctgacattgtgtttgtat 4803905  T

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Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 723 - 782
Target Start/End: Complemental strand, 10779356 - 10779297
Alignment:
Q  723 accttttcttcagcactgatgttgagaaacatgtcaatgaagctgacattgtgtttgtat 782  Q
    ||||||||||||||||||||||||| ||||||||| |||||||| | |||||||||||||    
T  10779356 accttttcttcagcactgatgttgaaaaacatgtctatgaagctaaaattgtgtttgtat 10779297  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 453 - 517
Target Start/End: Complemental strand, 4819715 - 4819651
Alignment:
Q  453 ggtccaacaatgacagtcattgcatcaagatgtccatccattcaagtagttgtcgtcgatatctc 517  Q
    |||||| ||||| |||||||||||| || ||||||||||||| |||||| |||||| ||||||||    
T  4819715 ggtccagcaatggcagtcattgcattaatatgtccatccattgaagtagctgtcgttgatatctc 4819651  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 683 - 783
Target Start/End: Complemental strand, 4829399 - 4829301
Alignment:
Q  683 ctggtcttgatgaagtagtttaagcaatttcgtggcaaaaaccttttcttcagcactgatgttgagaaacatgtcaatgaagctgacattgtgtttgtat 782  Q
    ||||||||||||| ||||   ||||||||||||||||| ||| |||||||||||  ||||||| | ||| ||||| | ||||||||||| ||||||||||    
T  4829399 ctggtcttgatgatgtagca-aagcaatttcgtggcaagaac-ttttcttcagctatgatgttaaaaaatatgtctacgaagctgacatagtgtttgtat 4829302  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 361 - 446
Target Start/End: Complemental strand, 4815199 - 4815114
Alignment:
Q  361 tatttactgatacatcttaacaccagtgtggatatgttaggaaaggaaaaaatggt-aagatttgctgcattggtgctggatatgta 446  Q
    ||||||||||||||  | ||||||| |||||||| |||||| ||||||||| |||| |||||||||||||| |||| || |||||||    
T  4815199 tatttactgatacacttcaacaccactgtggataggttaggcaaggaaaaa-tggtgaagatttgctgcatcggtgttgtatatgta 4815114  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 357 - 411
Target Start/End: Complemental strand, 10775889 - 10775835
Alignment:
Q  357 attgtatttactgatacatcttaacaccagtgtggatatgttaggaaaggaaaaa 411  Q
    |||||||||||| |||||| | ||||||| | |||||| ||||||||||||||||    
T  10775889 attgtatttactaatacatttgaacaccactatggataggttaggaaaggaaaaa 10775835  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 722 - 756
Target Start/End: Complemental strand, 19327215 - 19327181
Alignment:
Q  722 aaccttttcttcagcactgatgttgagaaacatgt 756  Q
    |||||||||||||||||||||||||||||||||||    
T  19327215 aaccttttcttcagcactgatgttgagaaacatgt 19327181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 476
Target Start/End: Complemental strand, 3665277 - 3665212
Alignment:
Q  409 aaaatggt-aagatttgctgcattggtgctggatatgtaggggagggtccaacaatgacagtcattgca 476  Q
    |||||||| |||||||||||||||||||| |||||||| ||    |||||||||||| |||||||||||    
T  3665277 aaaatggtgaagatttgctgcattggtgccggatatgtcgg---tggtccaacaatggcagtcattgca 3665212  T

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