View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20496_low_13 (Length: 470)

Name: NF20496_low_13
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20496_low_13
NF20496_low_13
[»] chr6 (2 HSPs)
chr6 (144-305)||(14764397-14764564)
chr6 (13-144)||(14764617-14764748)
[»] chr3 (3 HSPs)
chr3 (144-305)||(43979170-43979336)
chr3 (13-144)||(17731229-17731362)
chr3 (13-144)||(19032460-19032593)
[»] chr5 (3 HSPs)
chr5 (13-144)||(35429107-35429238)
chr5 (63-146)||(41340509-41340592)
chr5 (144-268)||(35428932-35429054)
[»] chr4 (2 HSPs)
chr4 (14-144)||(31326416-31326546)
chr4 (144-246)||(31326605-31326707)
[»] chr2 (2 HSPs)
chr2 (144-276)||(33301613-33301746)
chr2 (13-140)||(33301804-33301931)
[»] chr1 (2 HSPs)
chr1 (144-276)||(6139206-6139339)
chr1 (13-144)||(6139022-6139153)
[»] chr8 (1 HSPs)
chr8 (149-305)||(392801-392963)
[»] chr7 (1 HSPs)
chr7 (14-75)||(15589020-15589081)


Alignment Details
Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 144 - 305
Target Start/End: Complemental strand, 14764564 - 14764397
Alignment:
Q  144 gtgatgaaagcacttcatcaagctcaatgttgctaactggaagtggggctaatgggaagaagatccatgcaaatagtatgtcgtactggaagtgtggaat 243  Q
    |||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| |||  ||||||||||||||    
T  14764564 gtgatgaaagcacttcatcaaggtcaatgttgttaactagaagtggggctaatgggaagaagatccatgcaaataatatgccgtgttggaagtgtggaat 14764465  T
Q  244 gtctgggca-ttcaagagaaattgtctaggtgga-----atctgaaaaagactttgaggcaagtgcta 305  Q
    ||||||||| || |||||||||||||||||||||      |||||||||||||||||||||| |||||    
T  14764464 gtctgggcatttaaagagaaattgtctaggtggagcagtttctgaaaaagactttgaggcaaatgcta 14764397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 14764748 - 14764617
Alignment:
Q  13 aatattgtttttgagttagaatctattaaccttaagaaggatgatgatgataaagcattaaggttcattttgtcccctccaccttcttatgttcatcaca 112  Q
    |||| ||||| |||||||||||| ||| |  ||||||  |||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| ||    
T  14764748 aataatgtttctgagttagaatcaattgaagttaagattgatgatgaagataaagcgttaaggttcattttgtcccttccaccttcttatgttcatctca 14764649  T
Q  113 aaccagttttgatgtatgtgaaggaaagtttg 144  Q
    |||| ||||| ||||||| |||||||||||||    
T  14764648 aacctgttttcatgtatgggaaggaaagtttg 14764617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 144 - 305
Target Start/End: Complemental strand, 43979336 - 43979170
Alignment:
Q  144 gtgatgaaagcacttcatcaagctcaatgttgctaactggaagtggggctaatgggaagaagatccatgcaaatagtatgtcgtactggaagtgtggaat 243  Q
    ||||||||||||||||||||||||| ||||||||| ||  ||||||||||||||||||||||||||||||||| | |||||||| ||||||| |||||||    
T  43979336 gtgatgaaagcacttcatcaagctcgatgttgctagctataagtggggctaatgggaagaagatccatgcaaagaatatgtcgtgctggaagcgtggaat 43979237  T
Q  244 gtctgggcattcaagagaaattgtctaggtgga-----atctgaaaaagactttgaggcaagtgcta 305  Q
    ||||     || ||||||||||||| |||||||     |||||||||||||||||||||| ||||||    
T  43979236 gtctaccatttaaagagaaattgtccaggtggagcattatctgaaaaagactttgaggcaggtgcta 43979170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 17731362 - 17731229
Alignment:
Q  13 aatattgtttttgagttagaatctattaaccttaagaaggatgatgatgataaagcattaaggttcattttgtcccctccaccttcttatgttcatcaca 112  Q
    ||||||||||||||||||||||||||| |  ||||||  |||||||| |||||| | |||||| |||||||||||| |||| ||||||||||||||| ||    
T  17731362 aatattgtttttgagttagaatctattgaagttaagattgatgatgaggataaaacgttaaggctcattttgtcccttccaacttcttatgttcatctca 17731263  T
Q  113 aaccagttttgatg--tatgtgaaggaaagtttg 144  Q
    ||||  ||||||||  |||| |||||||||||||    
T  17731262 aacctattttgatgtatatgggaaggaaagtttg 17731229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 19032593 - 19032460
Alignment:
Q  13 aatattgtttttgagttagaatctattaaccttaagaaggatgatgatgataaagcattaaggttcattttgtcccctccaccttcttatgttcatcaca 112  Q
    ||||||||||||||||||||||||||| |  ||||||  |||||||| |||||| | |||||| |||||||||||| |||| ||||||||||||||| ||    
T  19032593 aatattgtttttgagttagaatctattgaagttaagattgatgatgaggataaaacgttaaggctcattttgtcccttccaacttcttatgttcatctca 19032494  T
Q  113 aaccagttttgatg--tatgtgaaggaaagtttg 144  Q
    ||||  ||||||||  |||| |||||||||||||    
T  19032493 aacctattttgatgtatatgggaaggaaagtttg 19032460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 35429238 - 35429107
Alignment:
Q  13 aatattgtttttgagttagaatctattaaccttaagaaggatgatgatgataaagcattaaggttcattttgtcccctccaccttcttatgttcatcaca 112  Q
    |||||||||| |||||||||||| ||| |  ||||||  |||||||| |||||| | |||||| |||||||||||| |||||||||||||||||||| ||    
T  35429238 aatattgtttctgagttagaatcaattgaagttaagattgatgatgaagataaaacgttaaggatcattttgtcccttccaccttcttatgttcatctca 35429139  T
Q  113 aaccagttttgatgtatgtgaaggaaagtttg 144  Q
    |||| ||||||||||||| |||||||||||||    
T  35429138 aacctgttttgatgtatgggaaggaaagtttg 35429107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 41340509 - 41340592
Alignment:
Q  63 taaagcattaaggttcattttgtcccctccaccttcttatgttcatcacaaaccagttttgatgtatgtgaaggaaagtttgtg 146  Q
    |||||| ||||||||||||| | ||| |||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||    
T  41340509 taaagcgttaaggttcatttagacccttccaccttcttatgttcatctcaaacctgttttgatgtatgggaaggaaagtttgtg 41340592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 144 - 268
Target Start/End: Complemental strand, 35429054 - 35428932
Alignment:
Q  144 gtgatgaaagcacttcatcaagctcaatgttgctaactggaagtggggctaatgggaagaagatccatgcaaatagtatgtcgtactggaagtgtggaat 243  Q
    |||||||||||||   |||||||||||||||| ||| | ||||||| ||||||||||||||||||||||||||   | | ||||  |||||||||||||     
T  35429054 gtgatgaaagcac---atcaagctcaatgttgttaattagaagtggagctaatgggaagaagatccatgcaaaggatttttcgtgttggaagtgtggaaa 35428958  T
Q  244 gtctgggca-ttcaagagaaattgtc 268  Q
    ||||||||| || |||||||||||||    
T  35428957 gtctgggcatttaaagagaaattgtc 35428932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 31326416 - 31326546
Alignment:
Q  14 atattgtttttgagttagaatctattaaccttaagaaggatgatgatgataaagcattaaggttcattttgtcccctccaccttcttatgttcatcacaa 113  Q
    ||||| ||||||||||||||||||||||  ||||||   ||||||| |||||||| |||||  |||||||||||| |||||||| ||||||||||| |||    
T  31326416 atattatttttgagttagaatctattaaagttaagatttatgatgaagataaagcgttaagcctcattttgtcccttccacctttttatgttcatctcaa 31326515  T
Q  114 accagttttgatgtatgtgaaggaaagtttg 144  Q
    ||  ||||||||||||| |||||||||||||    
T  31326516 acttgttttgatgtatgggaaggaaagtttg 31326546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 144 - 246
Target Start/End: Original strand, 31326605 - 31326707
Alignment:
Q  144 gtgatgaaagcacttcatcaagctcaatgttgctaactggaagtggggctaatgggaagaagatccatgcaaatagtatgtcgtactggaagtgtggaat 243  Q
    |||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||| ||||  |||||| | |||| |||  ||||||||||||||    
T  31326605 gtgatgaaagcacttcatcaagcttaatgttgctaactaaaagtggggctaatgggaagaggatcggtgcaaagaatatggcgtgttggaagtgtggaat 31326704  T
Q  244 gtc 246  Q
    |||    
T  31326705 gtc 31326707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 144 - 276
Target Start/End: Complemental strand, 33301746 - 33301613
Alignment:
Q  144 gtgatgaaagcacttcatcaagctcaatgttgctaactggaagtggggctaatgggaagaagatccatgcaaatagtatgtcgtactggaagtgtggaat 243  Q
    ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| | |||  | |  ||||||||||||||    
T  33301746 gtgatgaaaccacttcatcaagctcaatgttgttaactagaagtggggctaatgggaagaagacccatgcaaagaatataccatgttggaagtgtggaat 33301647  T
Q  244 gtctgggca-ttcaagagaaattgtctaggtgga 276  Q
     |||| ||| || |||||||||||||||| ||||    
T  33301646 atctgagcatttaaagagaaattgtctagatgga 33301613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 33301931 - 33301804
Alignment:
Q  13 aatattgtttttgagttagaatctattaaccttaagaaggatgatgatgataaagcattaaggttcattttgtcccctccaccttcttatgttcatcaca 112  Q
    |||||||||| |||||||||||||||| |  ||| ||  |||||||| |||||||  |||||   |||||| |||| |||||||| ||||||| ||||||    
T  33301931 aatattgtttctgagttagaatctattgaagttatgattgatgatgaagataaagtgttaagacgcattttttcccttccacctttttatgtttatcaca 33301832  T
Q  113 aaccagttttgatgtatgtgaaggaaag 140  Q
    |||  |||||||||| || |||||||||    
T  33301831 aacttgttttgatgtttgagaaggaaag 33301804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 144 - 276
Target Start/End: Original strand, 6139206 - 6139339
Alignment:
Q  144 gtgatgaaagcacttcatcaagctcaatgttgctaactggaagtggggctaatgggaagaagatccatgcaaatagtatgtcgtactggaagtgtggaat 243  Q
    |||||||||||||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||   | | ||||  ||||| |||||||     
T  6139206 gtgatgaaagcacttcatcaggctcaatgttgttgactagaagtggggctaatgggaagaagatccatgcaaaggatttttcgtgttggaaatgtggaaa 6139305  T
Q  244 gtctgggca-ttcaagagaaattgtctaggtgga 276  Q
    ||||||||| || ||||||||||||| |||||||    
T  6139306 gtctgggcatttaaagagaaattgtccaggtgga 6139339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 6139022 - 6139153
Alignment:
Q  13 aatattgtttttgagttagaatctattaaccttaagaaggatgatgatgataaagcattaaggttcattttgtcccctccaccttcttatgttcatcaca 112  Q
    |||||||||| |||||||||||| ||| |  ||||||  |||||||| |||||||| |||||| ||||||  |||| |||||||||||||||||||| ||    
T  6139022 aatattgtttatgagttagaatcaattgaagttaagattgatgatgaagataaagcgttaaggctcatttcatcccttccaccttcttatgttcatctca 6139121  T
Q  113 aaccagttttgatgtatgtgaaggaaagtttg 144  Q
    |||| ||||||||||||| |||| ||||||||    
T  6139122 aacctgttttgatgtatgggaagcaaagtttg 6139153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 149 - 305
Target Start/End: Complemental strand, 392963 - 392801
Alignment:
Q  149 gaaagcacttcatcaagctcaatgttgctaactggaagtggggctaatgggaagaagatccatgcaaatagtatgtcgtactggaagtgtggaatgtctg 248  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||| | ||||||||| ||||||| | ||||| ||  | |||||||||||| | ||    
T  392963 gaaagcacttcatcaagctcaatgttgttaactagaagtggggctaatagaaagaagatcaatgcaaagaatatgttgtgttagaagtgtggaatctttg 392864  T
Q  249 ggca-ttcaagagaaattgtctaggtggaa-----tctgaaaaagactttgaggcaagtgcta 305  Q
    | || || ||||||||||||| ||||||||     ||| ||||||||| | ||||||||||||    
T  392863 gacatttaaagagaaattgtccaggtggaacaatttctaaaaaagactctaaggcaagtgcta 392801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 15589081 - 15589020
Alignment:
Q  14 atattgtttttgagttagaatctattaaccttaagaaggatgatgatgataaagcattaagg 75  Q
    ||||||||| |||||||||||||||| |  ||||||  |||||||| |||||||| ||||||    
T  15589081 atattgtttctgagttagaatctattgaagttaagattgatgatgaagataaagcgttaagg 15589020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University