View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_14 (Length: 464)
Name: NF20496_low_14
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 169 - 448
Target Start/End: Original strand, 26570351 - 26570629
Alignment:
| Q |
169 |
gaagacatgcatttatttgacaaagtaattaagtttcctagctattatttagtattagaatataagtgaggattagggtttaaacctgaggaagctttcc |
268 |
Q |
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| T |
26570351 |
gaaggcatgcatttatttgacaaagtaattaagtttcctagctattatttagtat-agaatataagtgaggattagggtttaaacctgaggaagctttcc |
26570449 |
T |
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| Q |
269 |
aatgtggtgagttgataggatttcttgtgtgctaagctcctcaaaatgatctccagaactaccttgtgtccatgttccattactgccagtcattaatatc |
368 |
Q |
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| T |
26570450 |
aatgtggtgagttgataggatttcttgtgtgctaagctcctcaaaatgatctccagaactaccttgtgtccatgttccattactgccagtcattaatatc |
26570549 |
T |
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| Q |
369 |
agggaacaaagatcatgttaacaaaagtgacccatcatatcatatgtcattgtcatatgttacttctaatatcttcttct |
448 |
Q |
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| T |
26570550 |
agggaacaaagatcatgttaacaaaagtgacccatcatatcatatgtcattgtcatatgtaacttctaatatcttcttct |
26570629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 26569681 - 26569766
Alignment:
| Q |
7 |
tagattatactaactcagttaaattgatattagggagaatcgaaactataaccttgatgaggaactcacttgctttatattattaa |
92 |
Q |
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| T |
26569681 |
tagattatactaactcagttaaattgatatcagggagaatcgaaactgtaactttgatgaggaactcaattgctttatattattaa |
26569766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 26570266 - 26570317
Alignment:
| Q |
84 |
tattattaatatgttgtaccaagtaaatctcaaatgtccaaatttgaaatta |
135 |
Q |
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| T |
26570266 |
tattattaatatgttgtaccaagtaaatctcaaatgtccaaatttgaaatta |
26570317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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