View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_15 (Length: 441)
Name: NF20496_low_15
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Complemental strand, 32191176 - 32190755
Alignment:
| Q |
16 |
cagacatgaaatcagtgaattatcatttaaagaagcctccagcaaccttagcaagaccatcacctaacccatgatgtccacct---------tcagactt |
106 |
Q |
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| T |
32191176 |
cagacatgaaatcagtgaattatcatttaaagaagcctccagcaaccttagcaagaccatcacctaacccatgatgtccacctcctccaccttcagactt |
32191077 |
T |
|
| Q |
107 |
ttccgcatcattacctttgtgatgatccggtttggaagaaggtggaggtgtcgtggccgcatcatgacctttgggatgataaccatgcagataatcagca |
206 |
Q |
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| T |
32191076 |
ttccgcatcattacctttgtgatgatccggtttggaagaaggtggagcagtcgtggccgcatcatgacctttgggatgataaccatgcagataatcagca |
32190977 |
T |
|
| Q |
207 |
gccttatcaacatactgtcctaaccccttctgatcatccaatttagcatactgaccaaccgcatcaagaagatctcctgcagcctccgccaccttcgcct |
306 |
Q |
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| T |
32190976 |
gccttatcaacatactgtcctaaccccttctgatcatccaatttagcatactgaccaaccgcatcaagaagatctcctgcagcctccgccaccttcgcct |
32190877 |
T |
|
| Q |
307 |
tgtccatcggcttttgatctgcagagcctttccccaaacttgattgtgctgcctctgctacaatttttgcactcgccataagctcgctggttgaaatctt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32190876 |
tgtccatcggcttttgatctgcagagcctttccccaaacttgattgtgctgcctctgctacaatttttgcactcgccataagctcgctggttgaaatctt |
32190777 |
T |
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| Q |
407 |
cttctcttccccatggctccct |
428 |
Q |
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| T |
32190776 |
cttctcttccccatggctccct |
32190755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 191 - 289
Target Start/End: Complemental strand, 32210367 - 32210269
Alignment:
| Q |
191 |
atgcagataatcagcagccttatcaacatactgtcctaaccccttctgatcatccaatttagcatactgaccaaccgcatcaagaagatctcctgcagc |
289 |
Q |
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|||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||| |||||||| || ||||| |
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| T |
32210367 |
atgcagataatcagcagctttatcaacatatgatcctacacctttctgatcatccaatttagcatactgaccaactgcatctagaagatcaccagcagc |
32210269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 32210242 - 32210161
Alignment:
| Q |
334 |
ctttccccaaacttgattgtgctgcctctgctacaatttttgcactcgccataagctcgctggttgaaatcttcttctcttc |
415 |
Q |
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||||||| |||| ||| ||||||||||||||||| | |||||||| ||||| ||||| ||||||||||||||||||||||| |
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| T |
32210242 |
ctttcccaaaacctgactgtgctgcctctgctactacctttgcacttgccattagctcactggttgaaatcttcttctcttc |
32210161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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