View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_16 (Length: 438)
Name: NF20496_low_16
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 388
Target Start/End: Complemental strand, 42845599 - 42845226
Alignment:
| Q |
17 |
agaactcaagcttattctttgaggaaccacttgatgaggctttaacgatgacagaattataacagtttgcttcaagaactttagagttaggggtcatttt |
116 |
Q |
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| T |
42845599 |
agaactcaagcttattctttgaggaaccacttgatgaggctttaacgatgacagaattataacagtttgcttcaagaactttagagttaggggtcatttt |
42845500 |
T |
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| Q |
117 |
caaattacaatcattgcatcgcgtcatgattacttctaaggattgaccatatgaatctttaaaattctctgttggattgcttatcttacagttg--actt |
214 |
Q |
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| T |
42845499 |
caaattacaatcattgcattgcgtcatgattacttctaaggattgaccatatgaatctttaaaattctctgttagattgcttatcttacagttgacactt |
42845400 |
T |
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| Q |
215 |
cttgtaactgggtcgaacttatcattcctaaaagcttaccgaatgaagttctgttggaaaaattgtattcagctgtgcttagctgatcttccacttctgc |
314 |
Q |
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| T |
42845399 |
cttgtaactgggtcgaacttgtcattcctaaaagtttaccgaatgaagttctgttggaaaaattgtattcagctgtgcttagctgatcttccacttctgc |
42845300 |
T |
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| Q |
315 |
ataattgtcttagaatgatcctatcttttcaggattttgataaattgaaaaactctagaaaattgaaatttaac |
388 |
Q |
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| T |
42845299 |
ataattgtcttagaatgatcctatcttttcgggattttgataaattgaaaaactctagaaaattgaaatgtaac |
42845226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 157 - 366
Target Start/End: Complemental strand, 41979412 - 41979203
Alignment:
| Q |
157 |
gattgaccatatgaatctttaaaattctctgttggattgcttatcttacagttgacttcttgtaactgggtcgaacttatcattcctaaaagcttaccga |
256 |
Q |
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| T |
41979412 |
gattgaccatataaatctctcaaattctcagttggattgcttctctgactgttaacttcatgtaactgggtcgaatttgccattcctaaaagcttactga |
41979313 |
T |
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| Q |
257 |
atgaagttctgttggaaaaattgtattcagctgtgcttagctgatcttccacttctgcataattgtcttagaatgatcctatcttttcaggattttgata |
356 |
Q |
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| T |
41979312 |
aagaagtcctgttggaaaaattgtattcagctgtgcttaaccgatcttctacttctgtgttgctgtctgagaatgatcctatcttctcaggattttgatc |
41979213 |
T |
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| Q |
357 |
aattgaaaaa |
366 |
Q |
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| T |
41979212 |
aattgaaaaa |
41979203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 41979603 - 41979474
Alignment:
| Q |
29 |
tattctttgaggaaccacttgatgaggctttaacgatgacagaattataacagtttgcttcaagaactttagagttaggggtcattttcaaattacaatc |
128 |
Q |
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||||||||||||| |||||||||||||||| ||| ||| || ||||| |||| ||||| | |||| |||||| |||||||||||||||||| | |
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| T |
41979603 |
tattctttgaggagccacttgatgaggcttcaacattgagagggttatagaagttgacttcatggacttcagagttgggggtcattttcaaattatggcc |
41979504 |
T |
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| Q |
129 |
attgcatcgcgtcatgattacttctaagga |
158 |
Q |
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|||| || || |||||||| |||||||||| |
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| T |
41979503 |
attgaattgcttcatgattgcttctaagga |
41979474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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