View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20496_low_17 (Length: 437)
Name: NF20496_low_17
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 419
Target Start/End: Original strand, 17995782 - 17996174
Alignment:
| Q |
20 |
aacaaaaatccataaccacaaccttcagattcaggtgctcatcaatcaccgctctcctcttaaaagaaacttggatcatggttacatccatcctctttct |
119 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
17995782 |
aacaaaaatccatacccataaccttcagattcaggtgctcatcaatcacccctctcctcttagaagaaacttggatcatggctacatccaacctctttct |
17995881 |
T |
|
| Q |
120 |
cccaatggtgtaatcatcaaaatctaagaataccccaaacaaagagccaatcttcttgaacaagggttcatcccaaacatggaggggaataccatgaaca |
219 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17995882 |
cccaattgtgtaatcatcaaaatctaagaacaccccaaacaaagagtcaatcttcttgaacaagggttcatcccaaacatggaggggaataccatgaaca |
17995981 |
T |
|
| Q |
220 |
tggagccaaaccgccctactatttgccaccaactgaggtgtccaccttctaaccgaagaaaacattgaataacaccaagctagatggctattgtgaactg |
319 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| | |
|
|
| T |
17995982 |
tggagccaaaccgccatactatctgccaccaactgaggtgtccaccttctaaccgaagaa-------aatatcaccaagctagatggctattgcgaaccg |
17996074 |
T |
|
| Q |
320 |
gatcaatatccttcatacattcaatatgcaggagcatctttctgtctcccatctctgtgactttaacaccttgaatgccttccataaccaaagcttgttg |
419 |
Q |
| |
|
| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17996075 |
ggtcaatatccttcataccttcaatatgcaaaagcatctttctgtctcccatctctatgactttaacacctcgaatgccttccataaccaaagcttgttg |
17996174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University