View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_18 (Length: 434)
Name: NF20496_low_18
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 9 - 416
Target Start/End: Complemental strand, 49133590 - 49133179
Alignment:
| Q |
9 |
agcataggctatggtaccaatttttcccgaagaaagtcctgcaagtcatgttgtagcacgatatataaataaataaata----taaacaaagagagctac |
104 |
Q |
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| T |
49133590 |
agcataggctatggtaccaatttttcccgaagaaagtcctgcaagtcatgttgtagcgcgatatataaataaataaataaatataaacaaagagagctac |
49133491 |
T |
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| Q |
105 |
tttgatttttcaaaatcaaaatgtattttttcaaacttaccagctgctacgaatgtctctgatgtataaaatccaataccattaattccaacagattgtt |
204 |
Q |
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| T |
49133490 |
tttgatttttcaaaatcaaaatgtattttttcaaacttaccagctgctacgaatgtctctgatgtataaaatccaataccattaattccaacagattgtt |
49133391 |
T |
|
| Q |
205 |
gacataccattaatccaacaccaatctgatatcatttcaaccagttagatactttctgaatatctaaatatagctttgattgaatttttggtagaaaatt |
304 |
Q |
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| T |
49133390 |
gacataccattaatccaacaccaatctgatatcatttcaaccagttagatactttctgaatatctaaatgtagctttgattgaatttttggtagaaaatt |
49133291 |
T |
|
| Q |
305 |
aagtatgttacttacaactacagaacgcgcgtgtttgttctggaacaaatccaaaagcttaactttaggaaggttttgaagagtttcaatataatcctaa |
404 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49133290 |
aagtatgttacttacaactacagaacgcgcatgtttgttctggaacaaatccaaaagcttaactttaggaaggttttgaagagtttcaatataatcctaa |
49133191 |
T |
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| Q |
405 |
tcaaataaaaaa |
416 |
Q |
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| T |
49133190 |
tcacataaaaaa |
49133179 |
T |
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Back To:
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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 6927164 - 6927070
Alignment:
| Q |
139 |
acttaccagctgctacgaatgtctctgatgtataaaatccaataccattaattccaacagattgttgacataccattaatccaacaccaatctga |
233 |
Q |
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| T |
6927164 |
acttaccagctgctacaaaagtctcagctgtatagaatcctatgccattaattccaacagattgttgaaatgccattaatccaactccaatctga |
6927070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 403
Target Start/End: Complemental strand, 6926955 - 6926897
Alignment:
| Q |
345 |
tggaacaaatccaaaagcttaactttaggaaggttttgaagagtttcaatataatccta |
403 |
Q |
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|||||||||||||||| |||| ||||||||| |||||||||||||||||| |||||| |
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| T |
6926955 |
tggaacaaatccaaaaacttagtcttaggaaggctttgaagagtttcaatattatccta |
6926897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 13883705 - 13883747
Alignment:
| Q |
182 |
accattaattccaacagattgttgacataccattaatccaaca |
224 |
Q |
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| T |
13883705 |
accatcaattccaacagattgttcacataccattaatccaaca |
13883747 |
T |
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