View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20496_low_23 (Length: 404)

Name: NF20496_low_23
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20496_low_23
NF20496_low_23
[»] chr2 (9 HSPs)
chr2 (15-387)||(15915523-15915899)
chr2 (266-353)||(15085810-15085896)
chr2 (261-351)||(42979452-42979539)
chr2 (276-357)||(15919556-15919634)
chr2 (268-354)||(37740000-37740085)
chr2 (267-355)||(886968-887052)
chr2 (260-360)||(18811372-18811469)
chr2 (309-354)||(32503250-32503294)
chr2 (337-385)||(36030535-36030583)
[»] chr4 (6 HSPs)
chr4 (261-384)||(11842353-11842472)
chr4 (261-381)||(55510214-55510332)
chr4 (262-364)||(45911325-45911423)
chr4 (292-385)||(18516552-18516640)
chr4 (293-328)||(34108360-34108395)
chr4 (331-378)||(45904660-45904707)
[»] chr5 (5 HSPs)
chr5 (287-385)||(18855678-18855773)
chr5 (267-354)||(4373675-4373760)
chr5 (291-369)||(33424896-33424972)
chr5 (310-358)||(27110120-27110167)
chr5 (333-385)||(35244027-35244079)
[»] chr8 (7 HSPs)
chr8 (261-383)||(38198130-38198248)
chr8 (334-385)||(34552676-34552727)
chr8 (288-379)||(9933311-9933401)
chr8 (334-385)||(27487105-27487156)
chr8 (268-354)||(37032430-37032514)
chr8 (308-344)||(30241081-30241116)
chr8 (274-354)||(37923187-37923265)
[»] scaffold0783 (1 HSPs)
scaffold0783 (303-369)||(6004-6069)
[»] scaffold0006 (1 HSPs)
scaffold0006 (303-369)||(81505-81570)
[»] chr3 (3 HSPs)
chr3 (267-385)||(54996761-54996871)
chr3 (267-369)||(651781-651881)
chr3 (267-313)||(18086030-18086076)
[»] chr6 (3 HSPs)
chr6 (267-354)||(4097621-4097707)
chr6 (331-385)||(1813994-1814048)
chr6 (267-347)||(16509331-16509408)
[»] chr1 (3 HSPs)
chr1 (267-354)||(40095042-40095128)
chr1 (288-357)||(50079490-50079557)
chr1 (267-311)||(49832597-49832641)
[»] chr7 (3 HSPs)
chr7 (267-313)||(30592303-30592349)
chr7 (303-364)||(21044906-21044966)
chr7 (309-369)||(48093984-48094043)
[»] scaffold0119 (1 HSPs)
scaffold0119 (264-312)||(37532-37580)


Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 387
Target Start/End: Original strand, 15915523 - 15915899
Alignment:
Q  15 tatactaaactagtacgtgtgtatatacatgcatacataagagtcatgattcatcgacgtgtaagtctaataatttacattaaattttaatcgttaa--- 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||       
T  15915523 tatactaaactagtacgtgtgtatatacatgcatacataagagtcatgattcatccacgtgtaagtctaataacttacatcaaattttaatcgttaaatt 15915622  T
Q  112 --attaatctaatggttctaatgtgtcgaattaagtaaatacatgtaactctttctttattctcttcattggttgattacgattcacttaagcacccaaa 209  Q
      |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  15915623 aaattaatctaatggttctaatatgtcgaattaagtaaatacatataactctttctttattctcttcattggttgattacgattcacttaagcacctaaa 15915722  T
Q  210 ctgaataactttattgagaatattctaagagtatgtttttgaagagtgattgacttgcttttcttttttaaattgaagacaatataaaatgttttttaaa 309  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||||||||||| | ||||  |    
T  15915723 atgaataactttattgagaatattctaagagtatgtttttgaagagtgaatgatatgcttttcttttttaaattaaagacaatataaaatatatttttta 15915822  T
Q  310 aaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctttcaattgttttaaaatatcaaacc 387  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15915823 aaatgaattaagtatgattc-aaatattatatggtcatttatcatattattctttcaattgttttaaaatatcaaacc 15915899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 353
Target Start/End: Complemental strand, 15085896 - 15085810
Alignment:
Q  266 gcttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatca 353  Q
    |||||| |||||||||||    |||||||||||| ||||||||||||| |||||||| |  ||  || ||||||||||||||||||||    
T  15085896 gcttttattttttaaattacgaacaatataaaatattttttaaaaaataaattaagtgt-ttttgaagtattatatgatcatttatca 15085810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 351
Target Start/End: Complemental strand, 42979539 - 42979452
Alignment:
Q  261 gacttgcttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttat 351  Q
    ||||||||||| | ||||||||| |||    ||||||||||||||  |||||||||| |||| ||||| |||||||||| |||||||||||    
T  42979539 gacttgcttttatattttaaattaaagttgctataaaatgttttt--aaaaatgaatcaagtgtgatt-aaaatattatgtgatcatttat 42979452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 357
Target Start/End: Original strand, 15919556 - 15919634
Alignment:
Q  276 tttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatatt 357  Q
    |||||||| || |||| ||||||| |||||||||||  |||| |||| |||||  |||||| ||||||||||||||||||||    
T  15919556 tttaaattaaaaacaaaataaaatattttttaaaaac-gaataaagtgtgatt--aaatatcatatgatcatttatcatatt 15919634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 37740085 - 37740000
Alignment:
Q  268 ttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcat 354  Q
    ||||||||||||||||  |||  |||||| |||||||||  ||||| |||||||| |||||  || |||||||||||| ||||||||    
T  37740085 ttttcttttttaaattccagattatataacatgttttttctaaaataaattaagtgtgatt-gaagtattatatgatcgtttatcat 37740000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 355
Target Start/End: Original strand, 886968 - 887052
Alignment:
Q  267 cttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcata 355  Q
    |||||||||||||||||  | ||||||||||||| ||||| |||| | ||||| || ||||| ||  ||||||||||||||||||||||    
T  886968 cttttcttttttaaatt--acacaatataaaatgcttttttaaaa-taaattatgtgtgattgaag-tattatatgatcatttatcata 887052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 360
Target Start/End: Original strand, 18811372 - 18811469
Alignment:
Q  260 tgacttgcttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattat 359  Q
    |||||| |||||||||||||||||  ||  | |||||| ||||||||  ||||| |||||||| |||||  ||||||||||||||  |||||||| ||||    
T  18811372 tgacttacttttcttttttaaattacagtaactataaagtgtttttt--aaaataaattaagtgtgatt-gaaatattatatgattgtttatcatgttat 18811468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 32503250 - 32503294
Alignment:
Q  309 aaaatgaattaagtatgattcaaaatattatatgatcatttatcat 354  Q
    ||||| |||||||||||||| ||||||||||||||| |||||||||    
T  32503250 aaaataaattaagtatgatt-aaaatattatatgattatttatcat 32503294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 385
Target Start/End: Complemental strand, 36030583 - 36030535
Alignment:
Q  337 tatatgatcatttatcatattattctttcaattgttttaaaatatcaaa 385  Q
    |||||| |||| |||||| || ||||||||||| |||||||||||||||    
T  36030583 tatatgctcatgtatcatgttgttctttcaatttttttaaaatatcaaa 36030535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 384
Target Start/End: Original strand, 11842353 - 11842472
Alignment:
Q  261 gacttgcttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattatt 360  Q
    ||||| ||||||||||| |||||  ||||| |||||||| |||||||||   |||||||||| ||||| ||  |||||||||||||||||||||||| |     
T  11842353 gacttacttttctttttcaaattacagacactataaaatattttttaaa---tgaattaagtctgattgaag-tattatatgatcatttatcatattgta 11842448  T
Q  361 ctttcaattgttttaaaatatcaa 384  Q
     |||||||| ||| ||||||||||    
T  11842449 atttcaattttttaaaaatatcaa 11842472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 261 - 381
Target Start/End: Original strand, 55510214 - 55510332
Alignment:
Q  261 gacttgcttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattatt 360  Q
    ||||| |||||| ||||||| || |||||||| ||||||||||||| |||| | |||||||| ||| | ||  ||||||||||||||| ||||| || ||    
T  55510214 gacttacttttcatttttaatttaaagacaatgtaaaatgtttttttaaaa-taaattaagtgtgactgaag-tattatatgatcattcatcatgttgtt 55510311  T
Q  361 ctttcaattgttttaaaatat 381  Q
     |||||||| |||||||||||    
T  55510312 atttcaatttttttaaaatat 55510332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 262 - 364
Target Start/End: Original strand, 45911325 - 45911423
Alignment:
Q  262 acttgcttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattc 361  Q
    |||| |||||||||||||||||   || | |||||||| |||||   ||||| |||||| | |||| |||||||||||||||| ||||||||||||||||    
T  45911325 acttacttttcttttttaaattacggatactataaaatattttt---aaaattaattaaatgtgat-caaaatattatatgattatttatcatattattc 45911420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 385
Target Start/End: Complemental strand, 18516640 - 18516552
Alignment:
Q  292 tataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctttcaattgttttaaaatatcaaa 385  Q
    |||||||||||||| |||||||||||||||| |||||  ||  ||||| |||||||||||||   | |||||||| || |||||||||||||||    
T  18516640 tataaaatgttttt-aaaaaatgaattaagtgtgatt-gaagcattatgtgatcatttatca---tgttctttcattttttttaaaatatcaaa 18516552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 328
Target Start/End: Complemental strand, 34108395 - 34108360
Alignment:
Q  293 ataaaatgttttttaaaaaatgaattaagtatgatt 328  Q
    ||||||||||||||||||||| ||||||||||||||    
T  34108395 ataaaatgttttttaaaaaataaattaagtatgatt 34108360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 378
Target Start/End: Original strand, 45904660 - 45904707
Alignment:
Q  331 aaatattatatgatcatttatcatattattctttcaattgttttaaaa 378  Q
    |||||||||||||| ||||||||||||||||||| |||  ||||||||    
T  45904660 aaatattatatgattatttatcatattattctttaaatgtttttaaaa 45904707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 385
Target Start/End: Original strand, 18855678 - 18855773
Alignment:
Q  287 gacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctttcaattgttttaaaatatcaaa 385  Q
    |||||||||||||| | ||  ||||||||||||||| ||||| ||  ||||||||||||||||||||| || ||||||||| | |||||||||||||||    
T  18855678 gacaatataaaatgctatt--aaaaatgaattaagtttgatttaag-tattatatgatcatttatcatgttgttctttcaaattttttaaaatatcaaa 18855773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 354
Target Start/End: Complemental strand, 4373760 - 4373675
Alignment:
Q  267 cttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcat 354  Q
    |||||||||||||||||   ||| |||||| | |||||||||||| | |||||||| ||||| ||| |||||||||||||||||||||    
T  4373760 cttttcttttttaaattacggactatataacaagttttttaaaaa-taaattaagtgtgattgaaa-tattatatgatcatttatcat 4373675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 369
Target Start/End: Complemental strand, 33424972 - 33424896
Alignment:
Q  291 atataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctttcaatt 369  Q
    ||||||||||||||| | ||||| |||||| | ||||| ||| |||||||||||||||||||||  |||| ||||||||    
T  33424972 atataaaatgttttt-ataaaataaattaaatctgatt-aaagtattatatgatcatttatcattctattatttcaatt 33424896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 27110120 - 27110167
Alignment:
Q  310 aaatgaattaagtatgattcaaaatattatatgatcatttatcatatta 358  Q
    |||| |||||||| ||||| |||||||||||||||||||||| ||||||    
T  27110120 aaataaattaagtgtgatt-aaaatattatatgatcatttattatatta 27110167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 385
Target Start/End: Original strand, 35244027 - 35244079
Alignment:
Q  333 atattatatgatcatttatcatattattctttcaattgttttaaaatatcaaa 385  Q
    ||||||||| |||||||||||| || || |||||||  |||||||||||||||    
T  35244027 atattatataatcatttatcatgtttttatttcaatatttttaaaatatcaaa 35244079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 383
Target Start/End: Complemental strand, 38198248 - 38198130
Alignment:
Q  261 gacttgcttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattatt 360  Q
    ||||| |||||| ||||||||||  ||||| |||||| ||||||||  |||||||||||||| |||||  || |||||||||||||| |||||| || ||    
T  38198248 gacttacttttcatttttaaattacagacactataaagtgtttttt--aaaatgaattaagtgtgatt-gaagtattatatgatcatatatcatgttgtt 38198152  T
Q  361 ctttcaattgttttaaaatatca 383  Q
     |||||||| ||| |||||||||    
T  38198151 atttcaatt-tttaaaaatatca 38198130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 385
Target Start/End: Original strand, 34552676 - 34552727
Alignment:
Q  334 tattatatgatcatttatcatattattctttcaattgttttaaaatatcaaa 385  Q
    ||||||||||||||||||||| || ||||||||||||||| || ||||||||    
T  34552676 tattatatgatcatttatcattttgttctttcaattgtttgaagatatcaaa 34552727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 379
Target Start/End: Original strand, 9933311 - 9933401
Alignment:
Q  288 acaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctttcaattgttttaaaat 379  Q
    ||||| |||||| ||||||  ||||| ||||||||||  || ||| ||||||||||||||||||||| || ||  ||||||| |||||||||    
T  9933311 acaatgtaaaatatttttttcaaaataaattaagtatttttgaaa-tattatatgatcatttatcatgttgttaattcaatttttttaaaat 9933401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 385
Target Start/End: Original strand, 27487105 - 27487156
Alignment:
Q  334 tattatatgatcatttatcatattattctttcaattgttttaaaatatcaaa 385  Q
    ||||||||||||||||||||| || ||||||||| | || ||||||||||||    
T  27487105 tattatatgatcatttatcatgttgttctttcaacttttataaaatatcaaa 27487156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 37032430 - 37032514
Alignment:
Q  268 ttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcat 354  Q
    ||||||||||||||||  |||| |||||| |||||||||  ||||| |||||||| ||||| ||| |||||||||||  ||||||||    
T  37032430 ttttcttttttaaattacagactatataacatgtttttt-taaaataaattaagtgtgatt-aaagtattatatgatagtttatcat 37032514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 344
Target Start/End: Original strand, 30241081 - 30241116
Alignment:
Q  308 aaaaatgaattaagtatgattcaaaatattatatgat 344  Q
    ||||||||||||||||||||| |||||||||||||||    
T  30241081 aaaaatgaattaagtatgatt-aaaatattatatgat 30241116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 354
Target Start/End: Complemental strand, 37923265 - 37923187
Alignment:
Q  274 tttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcat 354  Q
    ||||||||||  |||| |||||| ||||||||  |||| | ||||||||  |||| |||||||||||||||||||||||||    
T  37923265 tttttaaattacagactatataacatgtttttctaaaa-taaattaagtgcgatt-aaaatattatatgatcatttatcat 37923187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0783 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0783
Description:

Target: scaffold0783; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 6069 - 6004
Alignment:
Q  303 ttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctttcaatt 369  Q
    ||||||||||| ||| |||||||||||||  ||||||||||||||||||||| ||||| ||||||||    
T  6069 ttttaaaaaataaatcaagtatgattcaag-tattatatgatcatttatcatgttattatttcaatt 6004  T

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Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 81570 - 81505
Alignment:
Q  303 ttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctttcaatt 369  Q
    ||||||||||| ||| |||||||||| ||  ||||||||||||||||||||| ||||| ||||||||    
T  81570 ttttaaaaaataaatcaagtatgattgaag-tattatatgatcatttatcatgttattatttcaatt 81505  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 385
Target Start/End: Complemental strand, 54996871 - 54996761
Alignment:
Q  267 cttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctttca 366  Q
    |||||||||||||||||  |||   |||||||||||| ||||||  ||||| |||| ||||| ||  ||||||||||||||||||||| ||   ||||||    
T  54996871 cttttcttttttaaattacagat--tataaaatgtttattaaaa--tgaatgaagtgtgattgaag-tattatatgatcatttatcatgtt---ctttca 54996780  T
Q  367 attgttttaaaatatcaaa 385  Q
    ||| |||||||||||||||    
T  54996779 atttttttaaaatatcaaa 54996761  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 369
Target Start/End: Original strand, 651781 - 651881
Alignment:
Q  267 cttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctttca 366  Q
    |||||||||||||||||  |||| |||||| ||| |||||  ||||| |||||||| ||||| ||||||||||| |||| ||| |||| ||||| ||| |    
T  651781 cttttcttttttaaattatagactatataacatg-tttttctaaaataaattaagtgtgatt-aaaatattatacgatcctttgtcatgttattatttta 651878  T
Q  367 att 369  Q
    |||    
T  651879 att 651881  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 18086030 - 18086076
Alignment:
Q  267 cttttcttttttaaattgaagacaatataaaatgttttttaaaaaat 313  Q
    |||||||||||||||||  ||||| |||||||||||||||| |||||    
T  18086030 cttttcttttttaaattacagacattataaaatgttttttagaaaat 18086076  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 354
Target Start/End: Complemental strand, 4097707 - 4097621
Alignment:
Q  267 cttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcat 354  Q
    |||||||||||||||||   |||||||||| || ||||||  ||||| |||||||| |||||  || |||||||||||| ||||||||    
T  4097707 cttttcttttttaaattacggacaatataacattttttttccaaaataaattaagtgtgatt-gaagtattatatgatcgtttatcat 4097621  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 1813994 - 1814048
Alignment:
Q  331 aaatattatatgatcatttatcatattattctttcaattgttttaaaatatcaaa 385  Q
    ||||||||||| |||||||||||||  |||||||||| | ||||||||| |||||    
T  1813994 aaatattatatcatcatttatcataccattctttcaacttttttaaaatttcaaa 1814048  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 16509331 - 16509408
Alignment:
Q  267 cttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcat 347  Q
    |||||||||||| |||| |||||| ||||||||||||||  |||||| ||| |||| |||||  || ||||||||||||||    
T  16509331 cttttcttttttgaattaaagacactataaaatgttttt--aaaaataaatcaagtgtgatt-gaagtattatatgatcat 16509408  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 354
Target Start/End: Complemental strand, 40095128 - 40095042
Alignment:
Q  267 cttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcat 354  Q
    |||||| ||||||||||  |||| |||||| |||||||||  ||||| |||||||| ||||| ||  |||||||||||| ||||||||    
T  40095128 cttttcgtttttaaattacagactatataacatgttttttctaaaataaattaagtgtgattgaag-tattatatgatcgtttatcat 40095042  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 357
Target Start/End: Complemental strand, 50079557 - 50079490
Alignment:
Q  288 acaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatatt 357  Q
    ||||||||||||||||||| |||| | |||||||| |  || ||| ||||||||||||||||||||||||    
T  50079557 acaatataaaatgtttttttaaaa-taaattaagtgttttt-aaagtattatatgatcatttatcatatt 50079490  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 49832597 - 49832641
Alignment:
Q  267 cttttcttttttaaattgaagacaatataaaatgttttttaaaaa 311  Q
    |||||||||||||||||  ||| |||||||| |||||||||||||    
T  49832597 cttttcttttttaaattacagataatataaagtgttttttaaaaa 49832641  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 30592303 - 30592349
Alignment:
Q  267 cttttcttttttaaattgaagacaatataaaatgttttttaaaaaat 313  Q
    |||||||||||||||||  ||||| ||||||||| ||||||||||||    
T  30592303 cttttcttttttaaattacagacactataaaatgatttttaaaaaat 30592349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 364
Target Start/End: Complemental strand, 21044966 - 21044906
Alignment:
Q  303 ttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattcttt 364  Q
    |||| |||||| |||||||| ||||| ||||| |||||||||||| ||| ||||||||||||    
T  21044966 tttttaaaaataaattaagtgtgatt-aaaatgttatatgatcatctatgatattattcttt 21044906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 369
Target Start/End: Original strand, 48093984 - 48094043
Alignment:
Q  309 aaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctttcaatt 369  Q
    ||||| |||||||| || || ||| ||||||||||||||||||||| ||||| ||||||||    
T  48093984 aaaataaattaagtgtggtt-aaagtattatatgatcatttatcattttattatttcaatt 48094043  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 37580 - 37532
Alignment:
Q  264 ttgcttttcttttttaaattgaagacaatataaaatgttttttaaaaaa 312  Q
    ||||||||||||||||||||  ||||||||||| ||| |||||| ||||    
T  37580 ttgcttttcttttttaaattacagacaatataagatgatttttagaaaa 37532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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