View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_3 (Length: 630)
Name: NF20496_low_3
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 154 - 606
Target Start/End: Original strand, 33514293 - 33514745
Alignment:
| Q |
154 |
ctgattggtgtaggtgaggnnnnnnnccataaaaggcagcggagaagaaatataccaaacagagcttgtacaattattttcggaagaggatgaggtaagc |
253 |
Q |
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| T |
33514293 |
ctgattggtgtaggtgaggaaaaaaaccataaaaggcagcggagaagaaatataccaaacagagcttgtacaattattttcggaagaggatgaggtaggc |
33514392 |
T |
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| Q |
254 |
ttcataacttcttgtatttacatctttggacttacatcaatatatatatgtgtgtgtgaaatatcctttttactattcacaggtacgtgtgttttttgcg |
353 |
Q |
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| T |
33514393 |
ttcataacttcttgtatttacatttttggacttacatcaatatatatatgtgtgtgtgaaatatcctttttactattcacaggtacgtgtgttttttgcg |
33514492 |
T |
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| Q |
354 |
atgcttgatgatgagctgaacaaagtgaaccaattttacattaaacaagagaatgaattcattgagagaagagaagccttgaacaaacagcttcagattt |
453 |
Q |
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| T |
33514493 |
atgcttgatgatgagctaaacaaggtgaaccaattttacattaaacaagagaatgaattcattgagagaagagaagccttgaacaaacagcttcagattt |
33514592 |
T |
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| Q |
454 |
tgcaagacctaaagcaaattattaatgatagacgacggaaaaattatccgccaccgaaagcaaataatacagagactttcccgcgttctccagcacggga |
553 |
Q |
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| T |
33514593 |
tgcaagacctaaagcaaattattaatgatagacgacggaaaaattatccgccaccgaaagcaaataatacagagactttcccgcgttctccaacacggga |
33514692 |
T |
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| Q |
554 |
ttctgattactcattaggttagttttcttttacgaagtttaaatccttcgtag |
606 |
Q |
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| T |
33514693 |
ttctgattactcattaggttagttttctttgacgaagtttaaatccttcgtag |
33514745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33514109 - 33514141
Alignment:
| Q |
1 |
cagcataatttttatttttgaagagtgagcagc |
33 |
Q |
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| T |
33514109 |
cagcataatttttatttttgaagagtgagcagc |
33514141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 44064166 - 44064118
Alignment:
| Q |
214 |
agagcttgtacaattattttcggaagaggatgaggtaagcttcataact |
262 |
Q |
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| T |
44064166 |
agagcttgtgcaatttttttcggaggaggatgaggtaggcttcataact |
44064118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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