View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20496_low_30 (Length: 382)
Name: NF20496_low_30
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 16011606 - 16011270
Alignment:
| Q |
18 |
gttgttgtatgcactataatcaggtaataacatattctcaaacttgattttgttatagtaatttttcaaatgttttatgtattactcttcacttgaaatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16011606 |
gttgttgtatgcactataatcaggtaataacatattctcaaacttgattttgttatagtaatttttcaaatgttttatgtattactcttcacttgaaatc |
16011507 |
T |
|
| Q |
118 |
ttattgaggataatgcatgtaatggattttcaattttgatctaacttt---tcnnnnnnnaattgcagcggtggaggtttagctgcatatggtgatagca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
16011506 |
ttattgaggataatgcatgtaatggattttcaattttgatctaacttttttttttttttaaattgcagcggtggaggtttagctgca------------- |
16011420 |
T |
|
| Q |
215 |
gatcagcatatagtgatagtggtgatcaaagaccaagaaagaaagtggtagtgcttggaactggttgggctggaacaagttttgtgaaaagcatgaaaaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16011419 |
--------tatagtgatagtggtgatcaaagaccaagaaagaaagtggtagtgcttggaactggttgggctggaactagttttgtgaaaagcatgaaaaa |
16011328 |
T |
|
| Q |
315 |
ctcatcttatgatattcatgttgtttcaccacgtaattattttgcattcactcctttg |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16011327 |
ctcatcttatgatattcatgttgtttcaccacgtaattattttgcattcactcctttg |
16011270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University