View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_31 (Length: 381)
Name: NF20496_low_31
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 113 - 297
Target Start/End: Original strand, 1762352 - 1762536
Alignment:
| Q |
113 |
gcaacagcatgagctatttcattggttcgcctcctaacaaattatatctttgagtttatgaaatgagagttaacaatgtcttgacaagtactaggaacac |
212 |
Q |
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| T |
1762352 |
gcaagagcatgagctattccattggttcgcctcctaacaaattatatctttgagtttatgaaatgagagttaacaatgtcttgacaagtactaggaacac |
1762451 |
T |
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| Q |
213 |
atccaaattcagtcatgtctattttgttactaagcaataaatctacaattctcttagaatctaactctgaatcaacatgttccaa |
297 |
Q |
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| T |
1762452 |
atccaaattcagtcatgtctattttgttactaagcaataaatctacaattctcttagaatctaactctgaatcaacatgttccaa |
1762536 |
T |
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Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 299 - 367
Target Start/End: Original strand, 1762711 - 1762779
Alignment:
| Q |
299 |
ttgttcttacgttgtttccacaggctccaaagttgacagttgagcaaggtagtgtcctagaatctcaaa |
367 |
Q |
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| T |
1762711 |
ttgttcttacgttgtttccacaagctccaaagttgacagttgagcaaggtagtgtcctagaatctcaaa |
1762779 |
T |
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