View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_32 (Length: 358)
Name: NF20496_low_32
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 22 - 347
Target Start/End: Original strand, 27154128 - 27154453
Alignment:
| Q |
22 |
aggattatactagtatacgattaaattgattttttagattcttttttgatccacagttattatcaatagaaatgatgagtttaaggaatgcaagattttg |
121 |
Q |
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| T |
27154128 |
aggattatactagtatacgattaaattgagtttttagattcttttttgatccaaagttattatcaatagaaatgatgaggttaaggaatgcaagattttg |
27154227 |
T |
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| Q |
122 |
cttattctattgctttcctcacctaattacttcaattatagttacattttgttgtttatgatttctatctttctgcttgcttttgctctgcattttcttg |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27154228 |
cttattctattgctttcctcacctaattacttcaattatagttacattttgttgtttgtgatttctatctttgtgcttgcttttgctctgcattttcttg |
27154327 |
T |
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| Q |
222 |
taagaatatcactactacttactcaaagttccatgagcaaattgtactgtagcctctatactttaaactttatgcctaaacatgatttcattaaccttcc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27154328 |
taagaatatcactactacttactcaaagttccatgagcaaattgtactgtagcctctatactttaaactttatgtctaaacatgatttcattaaccttcc |
27154427 |
T |
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| Q |
322 |
ccacttgaacagttgaacctccctat |
347 |
Q |
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|||||||||||||||||||||||||| |
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| T |
27154428 |
ccacttgaacagttgaacctccctat |
27154453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 163
Target Start/End: Original strand, 21435446 - 21435590
Alignment:
| Q |
22 |
aggattatactagtatacgattaaattgatt---ttttagattcttttttgatccacagttattatcaatagaaatgatgagtttaaggaatgcaagatt |
118 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||| ||| | |||| |||||||| || || |||||| |
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| T |
21435446 |
aggattatactagtatacgattaaattgattactttttagattgttttttggtccactgttattatcgatacacatgaagagtttaatgagtgaaagatt |
21435545 |
T |
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| Q |
119 |
ttgcttattctattgctttcctcacctaattacttcaattatagt |
163 |
Q |
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| T |
21435546 |
tggcgtattctattggtttcgtcaactaagtacttcaattatagt |
21435590 |
T |
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