View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_34 (Length: 353)
Name: NF20496_low_34
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 41686599 - 41686270
Alignment:
| Q |
16 |
caccgacaagaatattgcttcatatatcaccacttcttcgtatttatttcagaaacaatagaaaaaacagttgaacttacttatcatcagaaacataagc |
115 |
Q |
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| T |
41686599 |
caccgacaagaatattgcttcatatatcaccacttcttcgtatttatttcagaaacaatagaaaaaacagttgaacttacttatcatcagaaacataagc |
41686500 |
T |
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| Q |
116 |
agcaaatgtcgctaaaatgtcgaaacaaaatatagttcacatattacaaaaaatatcattaaatctgtacattgcaggaatagaatcagtttcccttgta |
215 |
Q |
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| T |
41686499 |
agaaaatgtcgctaaaatgtcgaaacaaaatacagttcacatattaca-aaaatatcattaaatctgtacattgcaggaatagaatcagtttcccttgta |
41686401 |
T |
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| Q |
216 |
tacaattttgaaaacagaaaataccnnnnnnnnnnnnnnnnncaaatgatacctcttaaacatggaaatgttgcgaaaaaggggagtataaaggtttcca |
315 |
Q |
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| T |
41686400 |
tacaattttgaaaacagaaaatacc---ataataataataatcaaatgatacctcttaaacatggaaatgttgcgaaaaaggggagtataaaggtttcca |
41686304 |
T |
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| Q |
316 |
acatcattgacaactggtgcattttcaatctctg |
349 |
Q |
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| T |
41686303 |
acatcagtgacaactggtgcattttcaatctctg |
41686270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 258 - 349
Target Start/End: Complemental strand, 51205978 - 51205887
Alignment:
| Q |
258 |
caaatgatacctcttaaacatggaaatgttgcgaaaaaggggagtataaaggtttccaacatcattgacaactggtgcattttcaatctctg |
349 |
Q |
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| T |
51205978 |
caaatgatacctcttaaacatggaaacattgtgaaaaagaggagcataaagatttccaacatcagttacaactggaacattttcaatctctg |
51205887 |
T |
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