View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_35 (Length: 348)
Name: NF20496_low_35
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 43163500 - 43163819
Alignment:
| Q |
18 |
ctacccaaaaccataaactcttaaaaacaacaattttcctctttcaatctacaacacatggaaatgaatacccaaaccacaccaatggaggtcttacccg |
117 |
Q |
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||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43163500 |
ctacccaaaaccataaactcttaaaaatatc-----tcctctttcaatctacaacacatggaaatgaatacccaaaccacaccaatggaggtcttacccg |
43163594 |
T |
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| Q |
118 |
aatatgatgtctttattcacacttctgatggcacacgcattccagcccacacaaccatcctggttagtttgtctccaattctttgtcattttannnnnnn |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43163595 |
aatatgatgtctttattcacacttctgatggcacacgcattccagcccacacaaccatcctggttagtttgtctccaattcttcgtcattttattttttt |
43163694 |
T |
|
| Q |
218 |
aattcgatatccaattcaaggactaacgattattgtaaatcaataattaacaggcctcggtgtctcctgttttcgagaacattattgatcaaccgcgcaa |
317 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43163695 |
aattcggtatccgattcaaggactaacgattattgtaaatcaataattaacaggcctcggtgtctcctgttttcgagaacattattgatcaaccgcgcaa |
43163794 |
T |
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| Q |
318 |
acaacgcagctccgaaagtataatc |
342 |
Q |
| |
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|||||||||||||||||| |||||| |
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| T |
43163795 |
acaacgcagctccgaaagaataatc |
43163819 |
T |
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