View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_36 (Length: 345)
Name: NF20496_low_36
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 327
Target Start/End: Complemental strand, 49003310 - 49002997
Alignment:
| Q |
14 |
agagctcattatattgaaaaggagtaaaaatgggtaatgcttgctttggaaagaagatgagcaacaagggagtggtgcaccccgtggtagttcaccgcat |
113 |
Q |
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| T |
49003310 |
agagctcattatattgcaaaggagtaaaaatgggtaatgcttgctttggaaagaagatgagcaacaagggagtggtgcaccccgtggtagttcaccgcat |
49003211 |
T |
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| Q |
114 |
tcgggatcaagccgtgacgatcaaggtgagaatgaccaaaggccaactcaaggatttaatagggaaggtggatacaaacaatgacaatttagaattaggc |
213 |
Q |
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| T |
49003210 |
tcgggatcaagccgtgacgatcaaggtgaaaatgaccaaaggccaactcaaggatttaatagggaaggtggatacaaacaatgacaatttagaattaggc |
49003111 |
T |
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| Q |
214 |
catttgatcgttcaagaatgctccaaagggaggcttcgtgctcgtgttgtaactgctgcagttggggatcatcaagatcattcctacaagttttcaaagg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
49003110 |
catttgatcgttcaagaatgctccaaagggaggcttcgtgctcgtgttgtagctgctgcagttggggatcatcatgatcattcctacaagttttcaaagg |
49003011 |
T |
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| Q |
314 |
ggcagagtttaagg |
327 |
Q |
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|||||||||||||| |
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| T |
49003010 |
ggcagagtttaagg |
49002997 |
T |
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