View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_37 (Length: 338)
Name: NF20496_low_37
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 6579435 - 6579753
Alignment:
| Q |
1 |
agatactctaaaattataaagtgagcctaggaaaacacccctaataggccgttttcatggaacattatgtaagatatccacaaaaggtggagaaaaaaca |
100 |
Q |
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| T |
6579435 |
agatactctaaaattataa-gtgagcctaggaaaacacccctaataggccattttcatggaacattatgtaagatatccacaaaaggtggagaaaaaaca |
6579533 |
T |
|
| Q |
101 |
tcatacaattttaccacaggccatcagggctgacttcagtaagacgtcccattaaaaaataaacagaaaaacttgagattttatatgtatcatgttgatg |
200 |
Q |
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| T |
6579534 |
tcatacaattttaccacaggccatcagggctgacttcagtaagatgtcccattaaaaaataaacagaaaaacttgagattttatatgtatcatgttgatg |
6579633 |
T |
|
| Q |
201 |
aatgaaaatatagtagcaaaactagaaacctaaaactgtggaaattttatatgttctagaagaaaatttccttaaatgttgaaggctctttaaagctaaa |
300 |
Q |
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| T |
6579634 |
gatgaaaatatagtagcaaaactagaaacctaaaactgtggaaattttatatgttctagaagaaaatatccttaaatgttgaaggctctttaaagctaaa |
6579733 |
T |
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| Q |
301 |
taaaagtagttacccgagga |
320 |
Q |
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| T |
6579734 |
taaaagtagttacccgagga |
6579753 |
T |
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