View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20496_low_38 (Length: 338)
Name: NF20496_low_38
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 18806421 - 18806630
Alignment:
| Q |
15 |
gagctcgattctcacaactcaatggacctcaaccaatcaaccattttcttagatccaaccagatcaaaacatatttatgttaattttttacatatccaat |
114 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
18806421 |
gagctcgattctcacaacttaacggacctcaaccaatcaaccattttcttagatccaaccagatcaaaaaatatttatgttaattttttacctatccaat |
18806520 |
T |
|
| Q |
115 |
ctcaatttaacgatcacgaatgacttatgaatgcgtctatttgcagacgacaagaaatcatggtcgaatttaggaagaaatgtcataagccagggagaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18806521 |
ctcaatttaacgatcacgaatgacttatgaatgcgtctatttgcagacgacaagaaatcatggtcgaatttaggaagaaatgtcataagccagggagaat |
18806620 |
T |
|
| Q |
215 |
agaaaatgat |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
18806621 |
agaaaatgat |
18806630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 215 - 321
Target Start/End: Original strand, 18807756 - 18807862
Alignment:
| Q |
215 |
agaaaatgatagacctcaaacgttcagcacgagccgatgcctggcatgcacgagctcttactgtactagcatctaatctccacgttccaattaattaagg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18807756 |
agaaaatgatagacctcaaacgttcagcacgagccgatgcatggcatgcacgagctcttactgtactggcatctaatctccacgttccaattaattaagg |
18807855 |
T |
|
| Q |
315 |
ctagttg |
321 |
Q |
| |
|
||||||| |
|
|
| T |
18807856 |
ctagttg |
18807862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 18797726 - 18797791
Alignment:
| Q |
256 |
tggcatgcacgagctcttactgtactagcatctaatctccacgttccaattaattaaggctagttg |
321 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18797726 |
tggcatacacgagctcttactgtactggcatctaatctccacgttccaattaattaaggctagttg |
18797791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University