View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20496_low_41 (Length: 324)

Name: NF20496_low_41
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20496_low_41
NF20496_low_41
[»] chr4 (4 HSPs)
chr4 (13-308)||(45735681-45735975)
chr4 (111-309)||(45746929-45747126)
chr4 (29-105)||(36050520-36050596)
chr4 (29-105)||(36053779-36053855)
[»] chr5 (1 HSPs)
chr5 (29-105)||(41709390-41709466)
[»] chr8 (2 HSPs)
chr8 (29-105)||(44765130-44765206)
chr8 (29-105)||(44761824-44761900)
[»] chr7 (1 HSPs)
chr7 (29-105)||(42513269-42513345)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 45735975 - 45735681
Alignment:
Q  13 atactcttttagattaagattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatcggtggat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45735975 atactcttttagattaagattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatcggtggat 45735876  T
Q  113 gttcaacaagagaatatactgaaattcctcgacctgtcccccagcacaactctctttgattcccccatcaattccaagccnnnnnnnngcatcatctttg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  45735875 gttcaacaagagaatatactgaaattcctcgacctgtcccccagcacaactctctttgattcccccatcaattccaagcc-cttttttgcatcatctttg 45735777  T
Q  213 ttcggctcagccaaaccaacaacattatcaaaacgaaccattccactcaaagccaaactcgaattatcaacgtcattttccacttttccagatttc 308  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45735776 ttcggctcagccaaaccaacaaaattatcaaaacgaaccattccactcaaagccaaactcgaattatcaacgtcactttccacttttccagatttc 45735681  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 111 - 309
Target Start/End: Complemental strand, 45747126 - 45746929
Alignment:
Q  111 atgttcaacaagagaatatactgaaattcctcgacctgtcccccagcacaactctctttgattcccccatcaattccaagccnnnnnnnngcatcatctt 210  Q
    ||||||| ||||| |||||||| || ||||||  ||| ||| ||| |||||| ||||||||||||||||||||||| |||||        ||  ||||||    
T  45747126 atgttcagcaagataatatacttaacttcctcctcctatcctccaacacaaccctctttgattcccccatcaattcaaagccccttttc-gcggcatctt 45747028  T
Q  211 tgttcggctcagccaaaccaacaacattatcaaaacgaaccattccactcaaagccaaactcgaattatcaacgtcattttccacttttccagatttct 309  Q
    ||||| || |||||||||| |||  ||||||| ||| ||||||| |||||||||||||||| ||||||||||| |||| ||| ||||||||||||||||    
T  45747027 tgttcagcccagccaaacccacagaattatcacaacaaaccatttcactcaaagccaaacttgaattatcaacatcatcttcaacttttccagatttct 45746929  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 36050596 - 36050520
Alignment:
Q  29 agattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatc 105  Q
    |||||||||||| |||||||| |||||||| |||   ||||| | |||||  ||||| |||||| ||||||||||||    
T  36050596 agattaagatgagtcatactaccttctagaactaggggagtcaccacattagtactcattattctaaatatcctatc 36050520  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 36053855 - 36053779
Alignment:
Q  29 agattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatc 105  Q
    |||||||||||| |||||||| |||||||| |||   ||||| | |||||  ||||| |||||| ||||||||||||    
T  36053855 agattaagatgagtcatactaccttctagaactaggggagtcaccacattagtactcattattctaaatatcctatc 36053779  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 41709466 - 41709390
Alignment:
Q  29 agattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatc 105  Q
    |||||||||||| |||||||| |||||||| ||| | ||||| | ||||||||| ||||||||| | ||||||||||    
T  41709466 agattaagatgagtcatactaccttctagaactagaggagtcaccacatttatattccttattctagatatcctatc 41709390  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 44765206 - 44765130
Alignment:
Q  29 agattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatc 105  Q
    |||||||||||| |||||||| |||||||| |||   ||||| | ||||||||| ||||||||| | ||||||||||    
T  44765206 agattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatc 44765130  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 44761900 - 44761824
Alignment:
Q  29 agattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatc 105  Q
    |||||||||||| ||| |||| |||||||| |||   ||||| | ||||||||| ||||||||| | ||||||||||    
T  44761900 agattaagatgagtcaaactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatc 44761824  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 42513269 - 42513345
Alignment:
Q  29 agattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatc 105  Q
    |||||||| ||| ||||| || |||||||| ||| ||||||| | |||||  | |||||||||| ||||||||||||    
T  42513269 agattaaggtgagtcataataacttctagaactagatgagtcaccacattagtgctccttattctaaatatcctatc 42513345  T

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