View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20496_low_42 (Length: 323)

Name: NF20496_low_42
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20496_low_42
NF20496_low_42
[»] chr2 (1 HSPs)
chr2 (13-308)||(3899014-3899311)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 3899311 - 3899014
Alignment:
Q  13 cacacacattgatgatagcttttcatttaactaaaaattatctccaaactcggtacacatgtatgttaatattggttattattattgttgttgt---caa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  3899311 cacacacattgatgatagcttttcatttaactaaaaattatctccaaactcggtacacatgtatgttaatattggttattattattgttgttgttgtcaa 3899212  T
Q  110 aagagtacatataacaatcaatttcttgagggaattatgcagcacatgttaacaaacatatatgtattatgaaagttgagaaacataaattcacagcatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3899211 aagagtacatataacaatcaatttcttgagggaattatgcagcacatgttaacaaacatatctgtattatgaaagttgagaaacataaattcacagcatt 3899112  T
Q  210 ataatataataccgattgattaatgccttaattcatcattttttacattaaatatcccttactccttcccagccacgacattcttggccgcgtccaatg 308  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3899111 ataatataataccgattgattaatgccttaattcattattttttacatt-aatatcccttactccttcccagccacgacattcttggccgcgtccaatg 3899014  T

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