View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_43 (Length: 321)
Name: NF20496_low_43
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 298
Target Start/End: Complemental strand, 50485478 - 50485201
Alignment:
| Q |
10 |
attatactgtaacacaaaacgggtttgcctactataacaaagcacgcaatagatcgaattgttaagcatagatgaactgttaatagagcacgcaattttc |
109 |
Q |
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| T |
50485478 |
attatactgtaacacaaaacgggtttgcctactataacaaagcacgcaatagatc-------------------aactgttaatagagcacgcaattttc |
50485398 |
T |
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| Q |
110 |
tcattgcctatcatacagacagtcctcatgtgtttcagcatcttgctgtaacaacaataaatccaaatccctataatac--------atgggaaatgaga |
201 |
Q |
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| T |
50485397 |
tcattgcctatcatacagacagtcctcatgtgtttcagcatcttgctgtaacaacaataaatccaaatccctataatactagttcagatgggaaatgaga |
50485298 |
T |
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| Q |
202 |
ggtttatcacaccatggactaaaaactccaataaaataaacaaattataaggctactacttcttttacacgataaaagaaacaaattaagggttgaa |
298 |
Q |
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| T |
50485297 |
ggtttatcacactatggactaaaaactccaataaaataaacaaattataaggctactacttcttttacacgataaaagaaacaaattaagggttgaa |
50485201 |
T |
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