View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_44 (Length: 319)
Name: NF20496_low_44
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 22 - 301
Target Start/End: Original strand, 11688275 - 11688556
Alignment:
| Q |
22 |
tttttcgtattataagttaataaaaggagctttagagtaagtaatgtggataggtaatataatttctcttctaaagcatttgaaaataataatgaatagc |
121 |
Q |
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| T |
11688275 |
tttttcgtattataagttaataaaaggagctttagagtaagtaatgtggataggtaatataatttcccttctaaagcatttgaaaataataatgaatagc |
11688374 |
T |
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| Q |
122 |
agctaaactgcataaacatgacaaacaagacnnnnnnnntacatattcaaacaatttcatgtattcaaaaccacgttcttcaaagatagcgatnnnnnnn |
221 |
Q |
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| T |
11688375 |
agctaaattgcataaacatgacaaacaagacaaaaaaaatacatattcaaacaatttcatgtatgcaaaaccacgttcttcaaagatagagataaaaaaa |
11688474 |
T |
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| Q |
222 |
ncac--aattatgaaattaacaagagctaattatattagagaatttgtacttgattgtcgtaagtcgaacttggggcagaag |
301 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11688475 |
acacaaaattatgaaattaacaagagctaactatattagagaatttgtacttgattgtcgtaagtcgaacttggggcagaag |
11688556 |
T |
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