View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_46 (Length: 312)
Name: NF20496_low_46
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 42849567 - 42849293
Alignment:
| Q |
18 |
gataaaaattatttcttattagatgagtatatgacatatgaatatatgattaattatatgcatatagaagcaattattgaaaacattttgaaaagatgag |
117 |
Q |
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| T |
42849567 |
gataaaaattatttcttattagatgagtatatgacatatga--------tcaattatatgcatatagaagcaattattgaaaacattttgaaaagatgag |
42849476 |
T |
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| Q |
118 |
taaggatgaaagaaaacacttgaagctttaacaaataaaagcaatgattaaaggaaaacaaactaacatagatactgattaattattgagggccatcaat |
217 |
Q |
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| T |
42849475 |
taaggatgaaagaaaacacttgaagctttaacaaataaaagcaatgattaaaggaaaacaaactaacatagatactgattaattattgagggccatcaat |
42849376 |
T |
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| Q |
218 |
tgtgaatattcgaaactataaacccaacattgtgcgaaatgcttgcaaagaaaaagacaatgcaaagagaaatttccttattc |
300 |
Q |
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| T |
42849375 |
tgtgaatattcgaaactataaacccaacattgtgcgaaatgcttgcaaagaaaaagacaatgcaaagagaaatttccttattc |
42849293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 296
Target Start/End: Complemental strand, 42856253 - 42856159
Alignment:
| Q |
201 |
tattgagggccatcaattgtgaatattcgaaactataaacccaacattgtgcgaaatgcttgcaaagaaaaagacaatgcaaagagaaatttcctt |
296 |
Q |
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| T |
42856253 |
tattgagagccattaatggtgaatattcgaaacgataaacccgata-tgtgcgaaatgcttgcaacagaaaagatagtgcaaagaaaaacttcctt |
42856159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 312
Target Start/End: Complemental strand, 42857856 - 42857746
Alignment:
| Q |
201 |
tattgagggccatcaattgtgaatattcgaaactataaacccaacattgtgcgaaatgcttgcaaagaaaaagacaatgcaaagagaaatttccttattc |
300 |
Q |
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| T |
42857856 |
tattgagagccatcaatggtgaatattcgaaaagataaacccaata-tatgtgaaatgtttgcaatagaaaagatactgcaaagaaaaacttccttattc |
42857758 |
T |
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| Q |
301 |
atctctctcgac |
312 |
Q |
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| T |
42857757 |
atatatctcgac |
42857746 |
T |
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