View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20496_low_53 (Length: 269)
Name: NF20496_low_53
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_53 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 177
Target Start/End: Complemental strand, 31780100 - 31779937
Alignment:
| Q |
14 |
aggcaatgtaatgttaccaataataaactcatgatcttagccttcttttacagatcacgctcttttaatttttatttccatttaccacaaatcatgttaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31780100 |
aggcaatgtaatgttaccaataataaactcatgatcttagccttcttttacagatcacgctcctttaatttttatttccatttaccacaaatcatgttaa |
31780001 |
T |
|
| Q |
114 |
atgtgatagaaagttaagtctttatttactcgtgtgttctttgtcctgatttctcatttacatg |
177 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31780000 |
atgtgatagaaagttaagtcttcatttactcgtgtgttctttgtcccgatttctcatttacatg |
31779937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 31779516 - 31779449
Alignment:
| Q |
187 |
atcgcaagcatatactattttatgtgtgtgattcaatgggaatgggatatgcattgttgttcattatt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31779516 |
atcgcaagcatatactattttatgtgtgtgattcaatgggaatgggatatgcattgttgttcattatt |
31779449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 2440088 - 2440193
Alignment:
| Q |
37 |
taaactcatgatcttagccttcttttacagatcacgctcttttaatttttatttccatttaccacaaatcatgttaaatgtgatagaaagttaagtcttt |
136 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||| |||||||||| |||| |||||||||||||| ||||||||||||||| |||| || |
|
|
| T |
2440088 |
taaactcatgatcttagcagtcttttacagatcatgctctttta-tttttatttctattttccacaaatcatgttgaatgtgatagaaagtcaagtttta |
2440186 |
T |
|
| Q |
137 |
atttact |
143 |
Q |
| |
|
||||||| |
|
|
| T |
2440187 |
atttact |
2440193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 1510888 - 1510831
Alignment:
| Q |
187 |
atcgcaagcatatactattttatgtgtgtgattcaatgggaatgggatatgcattgtt |
244 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1510888 |
atcgcaagcatatcctattttatgtgtgtgattcaatgggaatgggatatgcattgtt |
1510831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University