View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20496_low_56 (Length: 256)
Name: NF20496_low_56
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_56 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 8448662 - 8448585
Alignment:
| Q |
171 |
acttcaattttgttcatcagtttcgaactgaaatctcaatctctccatagtgaagtcgaggtatatcttcttcatctc |
248 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8448662 |
acttcaattttgttcatcagtttcgaactaaaatctcaatctctccatagtgaagtcgaggtatatcttcttcatctc |
8448585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 8236452 - 8236333
Alignment:
| Q |
22 |
agttcatcaatacttgactctaattacttgtttattaacctctcattttgaggataaa-ttgtcacattagtaatataaatacatcatctcattgaacga |
120 |
Q |
| |
|
||||||| ||||||||| |||||||||| |||| ||||||| ||| ||||||||| ||| |||| ||| | |||||||| |||||||||| |||| | |
|
|
| T |
8236452 |
agttcattaatacttgagcctaattacttagttataaacctcttatt--gaggataaaattgccacactagcactataaatatatcatctcatggaacca |
8236355 |
T |
|
| Q |
121 |
atctcacccatctttcttatgt |
142 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8236354 |
atctcacccatctttcttatgt |
8236333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 8448777 - 8448727
Alignment:
| Q |
16 |
ataagaagttcatcaatacttgactctaattacttgtttattaacctctca |
66 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
8448777 |
ataagaagttcattaatacttgactctaattacttggttattagcctctca |
8448727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 8236264 - 8236211
Alignment:
| Q |
187 |
tcagtttcgaactgaaatctcaatctctccatagtgaagtcgaggtatatcttc |
240 |
Q |
| |
|
||||||||||||| |||||||||||||||| || |||| ||||||||||||| |
|
|
| T |
8236264 |
tcagtttcgaactaaaatctcaatctctcccaagcaaagttgaggtatatcttc |
8236211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University