View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_59 (Length: 244)
Name: NF20496_low_59
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_59 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 14167226 - 14166983
Alignment:
| Q |
1 |
ttagatcatgatcgcggacaaaagattgatttcaattacatatatgaaaattaggaatttaacataatgtgatatttcttgaaatcacggtttcttgatt |
100 |
Q |
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| T |
14167226 |
ttagatcatgatcgcggacaaaagattgatttcaattacatatatgaaaattaggaatttaacataatgtgatatttcttgaaatcatggtttcttgatt |
14167127 |
T |
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| Q |
101 |
ttgtggttgattttttgagcagcttttggtagggctagtgactgcatttaggtatgttggtgacgagatcaatccaaaattggcgcaaactgaagctgga |
200 |
Q |
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| T |
14167126 |
ttgtggttgattttttgagcagcttttggtagggctagtgactgcatttaggtatgttggtgatgagatcaatccaaaattggcgcaaactgaagctgga |
14167027 |
T |
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| Q |
201 |
attcttcatgagtcagtgaaagagaagaaaggaagtcatgaaga |
244 |
Q |
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| T |
14167026 |
attcttcatgagtcagtgaaagagaagaaaggaagccatgaaga |
14166983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 14174025 - 14173946
Alignment:
| Q |
165 |
gagatcaatccaaaattggcgcaaactgaagctggaattcttcatgagtcagtgaaagagaagaaaggaagtcatgaaga |
244 |
Q |
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| T |
14174025 |
gagataaatccgaaattggcaaaaactgaagctgacattcttcatgaatcaatcaaagagaaaaaaggaaatcatgaaga |
14173946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 5180772 - 5180852
Alignment:
| Q |
113 |
ttttgagcagcttttggtagggctagtgactgcatttaggtatgttggtgacgagatcaatccaaaattggcgcaaactga |
193 |
Q |
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| T |
5180772 |
ttttgagcagcttttggttggattggtgagctcatttaggtatgagggagatgagatcaatgcaaaattggcacaaactga |
5180852 |
T |
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