View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_63 (Length: 237)
Name: NF20496_low_63
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 56240128 - 56239920
Alignment:
| Q |
14 |
gcacagaagaaatgggaatatattataaatggggaactacagcaaaaacaaaaggcaattgtgggggaagcatcggtatcacacttgcctcgttttgcat |
113 |
Q |
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| T |
56240128 |
gcacagaagaaatgggaatatattataaatggggaactacagcaaaaacaaaaggcaattgtgggggaagcatcggtatcacacttgcctcgttttgcat |
56240029 |
T |
|
| Q |
114 |
cttttgagatgcacaagatacatttttgtgacttaggttttcggcttggtgctggatacctttattgtcatcaggtacattcttttatctatcacaggtt |
213 |
Q |
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| T |
56240028 |
cttttgagatgcacaagatacatttttgtgacttaggttttcggcttggtgctggatacctttattgtcatcaggtacattcttttatctatcacaggtt |
56239929 |
T |
|
| Q |
214 |
tattgtttt |
222 |
Q |
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||||||||| |
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| T |
56239928 |
tattgtttt |
56239920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 23946529 - 23946339
Alignment:
| Q |
14 |
gcacagaagaaatgggaatatattataaatggggaactacagcaaaaacaaaaggcaattgtgggggaagcatcggtatcacacttgcctcgttttgcat |
113 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |
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| T |
23946529 |
gcacagaagaaatgggaatatactataaatggggaactacagcagaaacaaaaggcaattgtaggggaagcatctgtatcacacttgcctcgctttgcat |
23946430 |
T |
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| Q |
114 |
cttttgagatgcacaagatacatttttgtgacttaggttttcggcttggtgctggatacctttattgtcatcaggtacattcttttatcta |
204 |
Q |
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| T |
23946429 |
cttttgagatgcacaagatacatttttgtgacttaggctttcggcttggtgctggatacctttattgtcatcaggtacattcttttatcta |
23946339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 16106412 - 16106602
Alignment:
| Q |
14 |
gcacagaagaaatgggaatatattataaatggggaactacagcaaaaacaaaaggcaattgtgggggaagcatcggtatcacacttgcctcgttttgcat |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |
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| T |
16106412 |
gcacagaagaaatgggaatatattataaatggggaactacagcagaaacaaaaggcaattgtaggggaagcatctgtatcacacttgcctcgctttgcat |
16106511 |
T |
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| Q |
114 |
cttttgagatgcacaagatacatttttgtgacttaggttttcggcttggtgctggatacctttattgtcatcaggtacattcttttatcta |
204 |
Q |
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| T |
16106512 |
cttttgagatgcacaagatacatttttgtgatttaggctttcggcttggtgctggatacctttattgtcatcaggtacattcttttatcta |
16106602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 16624816 - 16625023
Alignment:
| Q |
14 |
gcacagaagaaatgggaatatattataaatggggaactacagcaaaaacaaaaggcaattgtgggggaagcatcggtatcacacttgcctcgttttgcat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| | | ||||||||||| || ||||||||||| ||||| ||| |
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| T |
16624816 |
gcacagaagaaatgggaatatattataaatggagaactacagaagaaacaaaaggcagtccttggggaagcatctgtgtcacacttgccccgtttcacat |
16624915 |
T |
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| Q |
114 |
cttttgagatgcacaagatacatttttgtgacttaggttttcggcttggtgctggatacctttattgtcatcaggtacattcttttatctatcacaggtt |
213 |
Q |
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|| |||||||||||||||||| ||||||||| || | |||| || ||||||| ||||||||||||||||||||||| ||||||| ||| |||| || | |
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| T |
16624916 |
ctgttgagatgcacaagatacgtttttgtgatataagctttcaactaggtgctgcatacctttattgtcatcaggtactttcttttttctgtcacgggct |
16625015 |
T |
|
| Q |
214 |
tattgttt |
221 |
Q |
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| |||||| |
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| T |
16625016 |
ttttgttt |
16625023 |
T |
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