View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_64 (Length: 237)
Name: NF20496_low_64
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 45316425 - 45316642
Alignment:
| Q |
1 |
tgatacgtgatcatgttatttaaaatcgtcaaacggattgcctctaacaactctggatcttccacttttctacctgtatcactgcaatcaaagttccaca |
100 |
Q |
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| T |
45316425 |
tgatacgtgatcatgttatttaaaatcgtcaaacggattgcctctaacaactctggatcttccacttttctacctgtatcactgcaatcaaagttccaca |
45316524 |
T |
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| Q |
101 |
atgcatctccaaataaattactacacattctaatcataaccttgatccataaaacgaacatgtacaatacacgggaatattgcttacgcctttgtgatgg |
200 |
Q |
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| T |
45316525 |
atgcatctccaaataaattactacacattctaatcataaccttgatccataaaacgaacatgtacaatacacgggaatattgcttacgcctttgtgatgg |
45316624 |
T |
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| Q |
201 |
aaaacttgttgtgcttgc |
218 |
Q |
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| T |
45316625 |
aaaacttgttgtgcttgc |
45316642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 968980 - 969051
Alignment:
| Q |
16 |
ttatttaaaatcgtcaaacggattgcctctaacaactctggatcttccacttttctacctgtatcactgcaa |
87 |
Q |
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| T |
968980 |
ttatttataattgtcaaacgaattgcctctaacaactctggatcttccacttttctgccagtatcactgcaa |
969051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 969792 - 969827
Alignment:
| Q |
183 |
cttacgcctttgtgatggaaaacttgttgtgcttgc |
218 |
Q |
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| T |
969792 |
cttacgcttttgtgatggaaaacttgttgtgcttgc |
969827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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