View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_68 (Length: 233)
Name: NF20496_low_68
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_68 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 10971266 - 10971363
Alignment:
| Q |
136 |
gattacagttaagcagagtgaaaacgcaattgttccaatgcggaagagaaatgaaaaattaacccgtcgacttcgagaagaacggcgaggtcattcga |
233 |
Q |
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| T |
10971266 |
gattacagttaagcagagtgaaaacgcaattgttccaatgcagaagagaaatgaaaaattaacccgtcgacttcgagaagaacggcgaagtcattcga |
10971363 |
T |
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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 10971148 - 10971205
Alignment:
| Q |
17 |
cacagaataattgttgatacctttattgaacgctagtcgattccctacacgatacgca |
74 |
Q |
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| T |
10971148 |
cacagaataattgttgatacctttattgaacgctagtcgattccctacacgatacgca |
10971205 |
T |
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