View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_7 (Length: 530)
Name: NF20496_low_7
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 45142362 - 45141850
Alignment:
| Q |
1 |
ataaaagattacagaaagtaaagatgaaaacacgatgtttggatcaatttgaatcctacatcctcactgaggtcgatctcatcactatgatcaagaatta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45142362 |
ataaaagattacagaaagtaaagatgaaaacacgatgtttggatcaatttgaatcctacatcctcactgaggtcgatctcatcactatgatcaagaatta |
45142263 |
T |
|
| Q |
101 |
caaggctttcctttctaatagtaggaacgcattccaaatttacaacaaacttagaaacagaatgtaggatatttatcacattccaaattggaccgcttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45142262 |
caaggctttcctttctaatagtaggaacgcattccaaatttacaacaaacttagaaacagaatgtaggatatttatcacattccaaattggaccacttat |
45142163 |
T |
|
| Q |
201 |
tttttaatagtagtaggaacacaactattaataacagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaa |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45142162 |
tttttaatagtagtaggcacacaactattaataacagaaaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaa |
45142063 |
T |
|
| Q |
301 |
agagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaacttcactcatctccatattcag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45142062 |
agagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaactttactcatctccatattcag |
45141963 |
T |
|
| Q |
401 |
tgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtacaagtcct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45141962 |
tgctctacatgcaagaggcgtggcaacaccatacggtgagattgaattgactctaattccgtaagctccaagctcaccacacgttgaacgtacaagtcct |
45141863 |
T |
|
| Q |
501 |
aagagaccatgtt |
513 |
Q |
| |
|
||||||||||||| |
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|
| T |
45141862 |
aagagaccatgtt |
45141850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 234 - 513
Target Start/End: Complemental strand, 45152774 - 45152495
Alignment:
| Q |
234 |
acagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtagccttta |
333 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||||||||||||||||||||| || || |||||||| | |||||||||||||||||| |||||||| |
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| T |
45152774 |
acagtgaagcctccatcgaccaccaagttttgtccactaatataagccgattcatcggaagcaagaaacatagcagcttctgcaatatgaccagccttta |
45152675 |
T |
|
| Q |
334 |
gtgtaattcctttcaaattagcagaatctttcatattagcttcaacttcactcatctccatattcagtgctctacatgcaagaggcgtggcaacaccatt |
433 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| | ||||||||||||||| |||||| |||||||||||| |
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| T |
45152674 |
gtgtaattcctttcaaattagcagaatcattcccaatagcttcaacttcactcacatccttgttcagtgctctacataaaagaggtgtggcaacaccaga |
45152575 |
T |
|
| Q |
434 |
cggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtacaagtcctaagagaccatgtt |
513 |
Q |
| |
|
||||| |||||||| ||||| ||||| |||||||||||||||| ||||||||| || ||||| |||| |||||||||| |
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|
| T |
45152574 |
aggtgaaattgaattaactcttattccataagctccaagctcactgcacgttgagcgaacaaggcctataagaccatgtt |
45152495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 228 - 481
Target Start/End: Complemental strand, 38256599 - 38256346
Alignment:
| Q |
228 |
ttaataacagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtag |
327 |
Q |
| |
|
||||| || |||||||||||||| || ||||| |||||||||||||||||||| ||||| || ||||||||||| | ||||| ||||||||||| | || |
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| T |
38256599 |
ttaatgactgagaagcctccatcaacgaccaagttgtgtccactaatataagcagattcatcagatgcaagaaacaaagcagtctctgcaatatgagcag |
38256500 |
T |
|
| Q |
328 |
cctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaacttcactcatctccatattcagtgctctacatgcaagaggcgtggcaac |
427 |
Q |
| |
|
|||| | ||||||||| | |||||||||| |||| | |||||||||||||||| | |||| | ||||||||||||||||||||| || ||||| |
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|
| T |
38256499 |
ccttcaatgtaattccctgcaaattagcataatcaaggccaacagcttcaacttcactcggcaccatgtccagtgctctacatgcaagaggtgtagcaac |
38256400 |
T |
|
| Q |
428 |
accattcggtgagattgaattgactctaattccgtaagctccaagctcaccgca |
481 |
Q |
| |
|
| ||| |||||||||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
38256399 |
agcatagggtgagattgaattgactctgattccataagctccaagctcaccgca |
38256346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 34530943 - 34530995
Alignment:
| Q |
33 |
cgatgtttggatcaa-tttgaatcctacatcctcactgaggtcgatctcatca |
84 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34530943 |
cgatatttggatcaactttgaatcctacatcctcgttgaggtcgatctcatca |
34530995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 331
Target Start/End: Original strand, 12700681 - 12700778
Alignment:
| Q |
234 |
acagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtagcctt |
331 |
Q |
| |
|
|||||||| || ||||| || |||||||| || |||||||| ||| | | ||| || || |||||||| | ||| ||||||||||||||| ||||||| |
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| T |
12700681 |
acagagaaaccaccatcaactaccaaattatgaccactaatgtaaacagcttcatcagaagcaagaaacaaagctgcttctgcaatatgcttagcctt |
12700778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 29361452 - 29361487
Alignment:
| Q |
60 |
atcctcactgaggtcgatctcatcactatgatcaag |
95 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
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|
| T |
29361452 |
atcctcactgaggtcgatcccatcactatgatcaag |
29361487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 30270658 - 30270623
Alignment:
| Q |
60 |
atcctcactgaggtcgatctcatcactatgatcaag |
95 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30270658 |
atcctcactgaggtcgatcccatcactatgatcaag |
30270623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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