View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20496_low_72 (Length: 227)
Name: NF20496_low_72
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_72 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 3899768 - 3899542
Alignment:
| Q |
1 |
cacggaccaatccacaaatgcccatctttagtgatacagaccacaccctgctcaataacacaaagaaccaaaatctcttgattaaatcatggccctatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3899768 |
cacggaccaatccacaaatgcccatctttagtgatacagaccacaccctgctcaataacacaaagaaccaaattctcttgattaaatcatggccctatgt |
3899669 |
T |
|
| Q |
101 |
gacaatcagacaaacgatatgtgattcatgtaggatatgtcataaccgcgtagccattttgaacctagaatcaattaaacataacctaaatgccaggtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3899668 |
gacaatcagacaaacgatatgtgattcatgtaggatatgtcataaccgcgtagccattttgaacctagaatcaattaaacataacctaaatgtcaggtga |
3899569 |
T |
|
| Q |
201 |
aaggtatatttttcattcggttaaacc |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
3899568 |
aaggtatatttttcattcggttaaacc |
3899542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University