View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_77 (Length: 211)
Name: NF20496_low_77
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 5576777 - 5576591
Alignment:
| Q |
17 |
aaatctaatgtcaatttactatgatttgacaataattaaaagttaatttgctatgtccatgactaagccatgatatagtttcattcattttcttcttagt |
116 |
Q |
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| T |
5576777 |
aaatctaatgtaaatttactatgatttgacaataattaaaagttaatttgctatgtccatgactaagccatgatatagtttcattcattttcttcttagt |
5576678 |
T |
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| Q |
117 |
tattga-nnnnnnnnnaaagatgcttcttagttgtaaataattggacactaattatgtccatgcgttagaattagactatatctctg |
202 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5576677 |
tattgattttgtttttaaagatgcttcttagttgtaaataattggacactaattatgttcatgcgttagaattagactatatctctg |
5576591 |
T |
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Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 46675382 - 46675285
Alignment:
| Q |
17 |
aaatctaatgtcaatttactatgatttgacaataattaaaagttaatttgctatgtccatgactaagccatgatatagtttcattcattttcttctta |
114 |
Q |
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||||||||||| |||||||||||| ||||| ||||| | |||||||||||||||||||||||||| |||||| ||| |||||| |||||||||||| |
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| T |
46675382 |
aaatctaatgtggatttactatgatatgacattaatttgatgttaatttgctatgtccatgactaagtcatgatttagcttcattaattttcttctta |
46675285 |
T |
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