View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_78 (Length: 205)
Name: NF20496_low_78
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_78 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 43047209 - 43047378
Alignment:
| Q |
17 |
cacagagtgacagactatggcatcactctttagaaaaaatgaaatgaagaatacaaatcatgtgatctatctccttca-----tttcatctatattctcc |
111 |
Q |
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| T |
43047209 |
cacagagagacagactatggtatcactctttagaaaaaatgaa-----gaatacaaatcatgtgatccatctccttcatttcatttcatccatattctcc |
43047303 |
T |
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| Q |
112 |
ttttaattttgaaggcttagcttccattattgtctatgtaaaacagagaaatccatcagtttcaaatgccactgt |
186 |
Q |
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| T |
43047304 |
ttttaattttgaaggcttagcttccattgttgtctatgtaaaacagagaattccatcagtttcaaatgccactgt |
43047378 |
T |
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Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 6249053 - 6249222
Alignment:
| Q |
17 |
cacagagtgacagactatggcatcactctttagaaaaaatgaaatgaagaatacaaatcatgtgatctatctccttca-----tttcatctatattctcc |
111 |
Q |
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||||||| || ||||||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
6249053 |
cacagagagatagactatggtatcactctttagaaaaaataaa-----gaatacaaatcatgtgatccatctccttcatttcatttcatctatattctcc |
6249147 |
T |
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| Q |
112 |
ttttaattttgaaggcttagcttccattattgtctatgtaaaacagagaaatccatcagtttcaaatgccactgt |
186 |
Q |
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| T |
6249148 |
ctttaattttgaaggcttagcttccattgttgtctatgtaaaacagagaattccatcaatttcaaatgccactgt |
6249222 |
T |
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