View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_low_8 (Length: 510)
Name: NF20496_low_8
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 14 - 492
Target Start/End: Original strand, 2450400 - 2450878
Alignment:
| Q |
14 |
agagtagatggttcactagacattataagaaacgattttcgtttggttaacagaagggtactagagcatgcaccgtgctcagttggaatttttgttgatc |
113 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2450400 |
agagtagacggttcactagacattataagaaacgattttcgtttggttaacaaaagggtactagagcatgcaccgtgctcagttggaatttttgttgatc |
2450499 |
T |
|
| Q |
114 |
gtgggcttggtggttcatgtcatgtgtctgcaagtaacgtttcctattgcattgctgtgcttttctttggtggtggtgatgaccgtgaagctcttgctta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2450500 |
gtgggcttggtggttcatgtcatgtgtctgcaagtaacgtttcctattgcattgctgtgcttttctttggtggtggtgatgaccgtgaagctcttgctta |
2450599 |
T |
|
| Q |
214 |
tggagctcgtatggccgaacaccctggcatacaattagtggttattcacttcttagtggaacctaatattgcagggaagatcaccaaagttgacgttgga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2450600 |
tggagctcgtatggccgaacaccctggcatacaattagtggttattcacttcttagtggaacctaatattgcagggaagatcaccaaagttgacgttgga |
2450699 |
T |
|
| Q |
314 |
gactcttctagcaataattcaatatcagattctgaagatggcgagtttcttgctgaatttaagctgaaaacagccaatgatgactcaattatctatgaag |
413 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2450700 |
gactcttctagcaataattcaatatcagattctgaagatggcgagtttcttgctgaatttaagctgaaaacagccaatgatgactcaattatctatgaag |
2450799 |
T |
|
| Q |
414 |
aaaggatagttaaagatgctgaagaaacagttgctaccattcgcgagattaatttctgcaacctatttcttgtgggtcg |
492 |
Q |
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| T |
2450800 |
aaagaatagttaaagatgctgaagaaacagttgctaccattcgcgagattaatttctgcaacctatttcttgtgggtcg |
2450878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 492
Target Start/End: Original strand, 2461420 - 2461888
Alignment:
| Q |
18 |
tagatggttcactagacattataagaaacgattttcgtttggttaacagaagggtactagagcatgcaccgtgctcagttggaatttttgttgatcgtgg |
117 |
Q |
| |
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|||| |||||||||| |||||||||||| |||||||| ||||||||| ||||||||| |||||||| | ||||||||||||||||||||||||||||| |
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| T |
2461420 |
tagacggttcactaggcattataagaaatgattttcgactggttaacaaaagggtactcgagcatgcttcatgctcagttggaatttttgttgatcgtgg |
2461519 |
T |
|
| Q |
118 |
gcttggtggttcatgtcatgtgtctgcaagtaacgtttcctattgcattgctgtgcttttctttggtggtggtgatgaccgtgaagctcttgcttatgga |
217 |
Q |
| |
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||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
2461520 |
gctcggtggttcatgtcatgtgtctgcaagtaatgtttcctattgcattgctgtgcttttctttggcggtggtgatgaccatgaagctcttgcttatgga |
2461619 |
T |
|
| Q |
218 |
gctcgtatggccgaacaccctggcatacaattagtggttattcacttcttagtggaacctaatattgcagggaagatcaccaaagttgacgttggagact |
317 |
Q |
| |
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|| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||| |||||| ||||||||||||||| |
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| T |
2461620 |
gcccgtatggccgaacaccctggcatacgattagtggttattcgcttcttagtggaacctaatattgttggacagattaccaaatttgacgttggagact |
2461719 |
T |
|
| Q |
318 |
cttctagcaataattcaatatcagattctgaagatggcgagtttcttgctgaatttaagctgaaaacagccaatgatgactcaattatctatgaagaaag |
417 |
Q |
| |
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||||||| | ||||||||||||| ||||||| ||||| ||||| |||||||||||||||||||| | | ||||||| |||||||||||||| |
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| T |
2461720 |
cttctaggagtaattcaatatca------gaagatgatgagttccttgcagaatttaagctgaaaacagctagttatgactctgttatctatgaagaaga |
2461813 |
T |
|
| Q |
418 |
gatagttaaagatgctgaagaaacagttgctaccattcgcgagattaatttctgcaacctatttcttgtgggtcg |
492 |
Q |
| |
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||||| |||||||||| ||||||||||||||| || || | |||||||| |||||||||||||||||||||||| |
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| T |
2461814 |
aatagtaaaagatgctgcagaaacagttgctactatccgtgggattaattgctgcaacctatttcttgtgggtcg |
2461888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 18 - 491
Target Start/End: Original strand, 2445643 - 2446110
Alignment:
| Q |
18 |
tagatggttcactagacattataagaaacgattttcgtttggttaacagaagggtactagagcatgcaccgtgctcagttggaatttttgttgatcgtgg |
117 |
Q |
| |
|
||||||||||||||||| ||| |||||| |||||||| || ||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| || |
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|
| T |
2445643 |
tagatggttcactagacgttacaagaaatgattttcgatttgttaacaaaagggtactcgagcatgcaccatgctcagttggaatttttgttgatcgcgg |
2445742 |
T |
|
| Q |
118 |
gcttggtggttcatgtcatgtgtctgcaagtaacgtttcctattgcattgctgtgcttttctttggtggtggtgatgaccgtgaagctcttgcttatgga |
217 |
Q |
| |
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||||||||| |||||||||||||||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2445743 |
acttggtggtacatgtcatgtgtctgcaagtaatgtttcttattgtgtggctgtgcttttctttggtggtggtgatgaccgtgaagctcttgcttacgga |
2445842 |
T |
|
| Q |
218 |
gctcgtatggccgaacaccctggcatacaattagtggttattcacttcttagtggaacctaatattgcagggaagatcaccaaagttgacgttggagact |
317 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||||| |||||| ||||||||||||| ||| |||| |||| |||| | || |||||||||||||||| |
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|
| T |
2445843 |
gctcgtacggccgagcaccctggcataagattagtgattattcgcttcttagtggaatctactattttaggggagattagcagcgttgacgttggagact |
2445942 |
T |
|
| Q |
318 |
cttctagcaataattcaatatcagattctgaagatggcgagtttcttgctgaatttaagctgaaaacagccaatgatgactcaattatctatgaagaaag |
417 |
Q |
| |
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| || | | ||| ||||| ||| || |||| ||||| ||||| |||||||||||||||||||||| ||||||||| ||||||| ||||| | |
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| T |
2445943 |
catcaatcggtaaatcaatctca------gaggatgaggagttccttgcggaatttaagctgaaaacagccagtgatgactccgttatctacgaagagaa |
2446036 |
T |
|
| Q |
418 |
gatagttaaagatgctgaagaaacagttgctaccattcgcgagattaatttctgcaacctatttcttgtgggtc |
491 |
Q |
| |
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||||| |||||||||| ||||||||||||| || ||| || |||||| |||||| || ||||||||||||| |
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| T |
2446037 |
aatagtaaaagatgctgccgaaacagttgctagtatccgcaagtttaattcctgcaatctgtttcttgtgggtc |
2446110 |
T |
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