View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20497_high_10 (Length: 412)

Name: NF20497_high_10
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20497_high_10
NF20497_high_10
[»] chr6 (9 HSPs)
chr6 (18-407)||(14215803-14216189)
chr6 (25-213)||(9907095-9907283)
chr6 (27-177)||(17292776-17292925)
chr6 (122-213)||(2682796-2682887)
chr6 (87-177)||(22469421-22469511)
chr6 (122-177)||(11324501-11324556)
chr6 (26-177)||(29599178-29599328)
chr6 (26-79)||(34018116-34018169)
chr6 (264-343)||(17779322-17779402)
[»] chr4 (13 HSPs)
chr4 (23-343)||(30972233-30972552)
chr4 (222-343)||(41995846-41995967)
chr4 (177-343)||(33435859-33436024)
chr4 (24-225)||(27269968-27270169)
chr4 (26-177)||(25130451-25130602)
chr4 (95-173)||(48336967-48337045)
chr4 (26-177)||(13137018-13137169)
chr4 (94-343)||(21204745-21204991)
chr4 (48-224)||(37772872-37773048)
chr4 (103-178)||(40153934-40154009)
chr4 (26-92)||(13157369-13157435)
chr4 (117-213)||(29521663-29521759)
chr4 (307-343)||(34787886-34787922)
[»] chr5 (6 HSPs)
chr5 (23-343)||(39839839-39840161)
chr5 (27-213)||(19314977-19315163)
chr5 (117-210)||(26778696-26778789)
chr5 (122-187)||(29994652-29994717)
chr5 (143-206)||(29651780-29651843)
chr5 (30-82)||(15773108-15773160)
[»] chr2 (10 HSPs)
chr2 (23-343)||(35590158-35590474)
chr2 (27-91)||(2167588-2167652)
chr2 (87-213)||(36176616-36176741)
chr2 (125-213)||(30505752-30505840)
chr2 (27-178)||(18948734-18948885)
chr2 (117-207)||(45131106-45131196)
chr2 (126-213)||(27009236-27009323)
chr2 (120-213)||(9840798-9840891)
chr2 (287-343)||(41300518-41300574)
chr2 (307-343)||(38409223-38409259)
[»] chr7 (14 HSPs)
chr7 (24-225)||(40347915-40348116)
chr7 (30-164)||(49035424-49035556)
chr7 (30-213)||(17116377-17116560)
chr7 (71-260)||(27076555-27076746)
chr7 (71-260)||(27201555-27201746)
chr7 (25-176)||(29374715-29374866)
chr7 (122-206)||(34237188-34237272)
chr7 (48-196)||(12092636-12092784)
chr7 (26-81)||(16560029-16560084)
chr7 (26-81)||(16605578-16605633)
chr7 (122-177)||(38153939-38153994)
chr7 (305-343)||(37917905-37917943)
chr7 (309-343)||(43026157-43026191)
chr7 (305-337)||(29374555-29374587)
[»] chr8 (6 HSPs)
chr8 (27-177)||(8462523-8462672)
chr8 (229-341)||(21523973-21524082)
chr8 (30-150)||(39435490-39435610)
chr8 (122-213)||(37929141-37929232)
chr8 (117-177)||(21523889-21523949)
chr8 (117-207)||(16840330-16840422)
[»] chr1 (11 HSPs)
chr1 (39-213)||(44675046-44675220)
chr1 (39-213)||(52626459-52626631)
chr1 (21-177)||(4889383-4889539)
chr1 (233-343)||(44653858-44653967)
chr1 (29-190)||(40708441-40708601)
chr1 (122-206)||(26260785-26260869)
chr1 (31-178)||(42450636-42450783)
chr1 (308-343)||(8440034-8440069)
chr1 (117-196)||(22583181-22583260)
chr1 (27-213)||(25392296-25392482)
chr1 (121-173)||(9484878-9484930)
[»] chr3 (6 HSPs)
chr3 (26-177)||(25845586-25845737)
chr3 (26-213)||(25408703-25408889)
chr3 (245-334)||(16124925-16125015)
chr3 (24-177)||(47160924-47161077)
chr3 (48-89)||(8074751-8074792)
chr3 (120-211)||(33692876-33692967)
[»] scaffold0047 (1 HSPs)
scaffold0047 (23-202)||(64272-64451)
[»] scaffold0204 (1 HSPs)
scaffold0204 (95-173)||(24489-24567)


Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 14216189 - 14215803
Alignment:
Q  18 gtcattacgtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgt 117  Q
    |||||||  ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14216189 gtcattatatgggaaatatggaaagaaaggaataatagggtatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcgctgacgt 14216090  T
Q  118 tcatgtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttatctgc 217  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  14216089 tcatgtggttgaagaagaaatttccttctcttctcttcgactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttattggc 14215990  T
Q  218 tttctttactcactgttttttgtatccattgtaaatatttgttttgtgactctggtgtctttctctggtataccttatgctagacatgaccttttgacgt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||    
T  14215989 tttctttactcactgttttttgtatccattgtaaatatttgttttgtgactctggtgtctttctctggtataccttgtgctaggcatgaccttttgatgt 14215890  T
Q  318 ggtaatataattcattttagcctcttnnnnnnnngaagagctcagaaggacatttagatcttatttgatattcattggtggattgttctt 407  Q
    ||||||||||||||||||||||||||         |||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  14215889 ggtaatataattcattttagcctcttaaaaaa---aagagctcagaaggacttttagatcttgtttgatattcattggtggattgttctt 14215803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 213
Target Start/End: Original strand, 9907095 - 9907283
Alignment:
Q  25 cgtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtg 124  Q
    |||||||||| ||||||||||  ||||||||| ||||||||||||| ||   ||| |||   |||||| | |||||| |||||||| |  | ||||||||    
T  9907095 cgtgggaaatttggaaagaaagaaataacaggttatttaatggcaaggatacctctattcctcaggtggtagataaaattaagtcgctcgctttcatgtg 9907194  T
Q  125 gttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttat 213  Q
    ||||||||||||||  |||||| ||| |||||| ||||||   ||||||||||| || || ||||| || || |||||||||| |||||    
T  9907195 gttgaaggagaaatacccttctattcccttcaattatcatgcgtggtggcttaatccattcaccattttaggcataggctaattgttat 9907283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 177
Target Start/End: Complemental strand, 17292925 - 17292776
Alignment:
Q  27 tgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtggt 126  Q
    |||||||| ||||||||||  ||||||| | ||||||||||||||||||| || ||| |||||||| |   |||  |||||||  |  | ||||||||||    
T  17292925 tgggaaatttggaaagaaagaaataacatg-tatttaatggcaaagaatgatcgattatgcaggtggtcattaagattaagtctctagcattcatgtggt 17292827  T
Q  127 tgaaggagaaatttccttctcttctcttcaactatcatagttggtggctta 177  Q
    |||| |  |||||| ||||||||| |||||| |||||| |||| |||||||    
T  17292826 tgaacgccaaatttgcttctcttcccttcaattatcatggttgatggctta 17292776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 2682796 - 2682887
Alignment:
Q  122 gtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttat 213  Q
    ||||||||||| |||||||||| || |||||||||| | |||| ||||||||||||  ||||| |||||| || | ||||| ||| ||||||    
T  2682796 gtggttgaaggtgaaatttcctactattctcttcaattgtcatggttggtggcttagtcctttcaccatgctgagcataggttaaaagttat 2682887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 22469421 - 22469511
Alignment:
Q  87 caggtgattgataaagttaagtcggtgacgttcatgtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggctta 177  Q
    |||||| | |||||| |||||||| |  | ||||||||||||||||| ||||  |||||||||| |||||| ||||||  |||||||||||    
T  22469421 caggtggtagataaaattaagtcgctcgctttcatgtggttgaaggataaatacccttctcttcccttcaattatcatgcttggtggctta 22469511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 11324501 - 11324556
Alignment:
Q  122 gtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggctta 177  Q
    ||||||||||| ||||||| ||||||||| |||||| |||||| | ||||||||||    
T  11324501 gtggttgaaggcgaaatttgcttctcttcccttcaattatcatgggtggtggctta 11324556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 177
Target Start/End: Complemental strand, 29599328 - 29599178
Alignment:
Q  26 gtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtgg 125  Q
    ||||||||| ||||||||||  ||||| | | |||||||||| ||| |||| || |||||||||||| | || ||  ||||||| ||  |  ||||||||    
T  29599328 gtgggaaatttggaaagaaagaaataataagttatttaatggaaaa-aatgttcgattgtgcaggtggtagacaagattaagtctgtagctgtcatgtgg 29599230  T
Q  126 ttgaaggagaaatttccttctcttctcttcaactatcatagttggtggctta 177  Q
    ||||||| |||||   ||||||||| |||||| ||  || ||||||||||||    
T  29599229 ttgaaggtgaaatacgcttctcttcccttcaattactatggttggtggctta 29599178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 34018169 - 34018116
Alignment:
Q  26 gtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctc 79  Q
    ||||||||||||||| ||||  ||||||||||| |||||||| ||||| |||||    
T  34018169 gtgggaaatatggaaggaaagaaataacaggatttttaatggtaaagattgctc 34018116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 343
Target Start/End: Complemental strand, 17779402 - 17779322
Alignment:
Q  264 tgactctggtgtctttctctggtataccttatgctagacatgacc-ttttgacgtggtaatataattcattttagcctctt 343  Q
    ||||| ||||||  |||||||| ||||||| ||||||  |||||| |||||  |||||||||||  |||||||||||||||    
T  17779402 tgactttggtgttcttctctggcataccttgtgctagggatgacccttttgcagtggtaatatatctcattttagcctctt 17779322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 23 - 343
Target Start/End: Complemental strand, 30972552 - 30972233
Alignment:
Q  23 tacgtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatg 122  Q
    ||||||| |||| ||||||||||  ||||||| | | |||||||||||||| ||||||||| |||||||| |||||||| |||||||| |||| ||||||    
T  30972552 tacgtggaaaatttggaaagaaagaaataacatgctctttaatggcaaagagtgctcaattatgcaggtggttgataaaattaagtcgctgactttcatg 30972453  T
Q  123 tggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttatctgctttct 222  Q
    ||| |||||| ||||||||||||||||| ||||||||||||| | ||||||||||  | ||| || || || || |||||||||||||||| ||||||||    
T  30972452 tggctgaaggcgaaatttccttctcttcccttcaactatcatggctggtggcttagtcatttcactatttttggcataggctaatagttatttgctttct 30972353  T
Q  223 ttactcactgttttttgtatccattgtaaatatttgttttgtgactctggtgtc-tttctctggtataccttatgctagacatgaccttttgacgtggta 321  Q
    ||| ||||||||||   | ||| ||||||||||||||||  ||||| ||||||| ||||  ||| ||| |||||| |||  | |||||||||| ||||||    
T  30972352 ttagtcactgttttggttttcccttgtaaatatttgttt--tgactttggtgtcttttccttggcatatcttatgttagggaggaccttttgatgtggta 30972255  T
Q  322 atataattcattttagcctctt 343  Q
    ||||| |||||| |||||||||    
T  30972254 atatatttcattgtagcctctt 30972233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 222 - 343
Target Start/End: Complemental strand, 41995967 - 41995846
Alignment:
Q  222 tttactcactgttttttgtatccattgtaaatatttgttttgtgactctggtgtctttctctggtataccttatgctagacatgaccttttgacgtggta 321  Q
    |||| ||||||| |||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||  | || ||||||| ||||||    
T  41995967 tttattcactgtattttgtttccattgtaaatatttgttctgtgactctgatgtctttctctggtataccttatgctagggaagatcttttgatgtggta 41995868  T
Q  322 atataattcattttagcctctt 343  Q
    ||||||||||||||||||||||    
T  41995867 atataattcattttagcctctt 41995846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 177 - 343
Target Start/End: Original strand, 33435859 - 33436024
Alignment:
Q  177 aacccttttaccatgttgggaataggctaatagttatctgctttctttactcactgttttttgtatccattgtaaatatttgttttgtgactctggtgtc 276  Q
    |||||||| ||| ||||||| ||||| |||||||||| ||||||||||| ||  ||||||| || ||| |||||||| |||| ||||||||| |||||||    
T  33435859 aaccctttcaccttgttgggcataggttaatagttatttgctttctttagtcgttgttttt-gtttcctttgtaaatgtttggtttgtgactatggtgtc 33435957  T
Q  277 tttctctggtataccttatgctagacatgaccttttgacgtggtaatataattcattttagcctctt 343  Q
    |||| |||| ||||||||| ||||  | ||| |||||| ||||||||||||||||||||| ||||||    
T  33435958 tttccctggcataccttatactagggaagacattttgatgtggtaatataattcattttaacctctt 33436024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 27270169 - 27269968
Alignment:
Q  24 acgtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgt 123  Q
    ||||| ||||| ||||||||||  ||||||| | | ||||| ||||   ||||  ||||||| || ||| |||||||| |||||||  | || |||||||    
T  27270169 acgtgagaaatctggaaagaaagaaataacatgctctttaaaggcactcaatgaccaattgttcacgtggttgataaaattaagtcaatcactttcatgt 27270070  T
Q  124 ggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttatctgctttctt 223  Q
    ||||||||| |||||||||||| |||| |||||| |||||| ||||||||||||  || || || || ||||  ||| |||||||||||| || ||||||    
T  27270069 ggttgaaggcgaaatttccttcacttcccttcaattatcatggttggtggcttagtccattcacaattttggacatatgctaatagttatttgttttctt 27269970  T
Q  224 ta 225  Q
    ||    
T  27269969 ta 27269968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 177
Target Start/End: Complemental strand, 25130602 - 25130451
Alignment:
Q  26 gtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtgg 125  Q
    |||||||||||||||||||| ||| |||| | | ||||| || | | |||||||||||||||| ||| | |||||  | |||||  |  | |||||||||    
T  25130602 gtgggaaatatggaaagaaaggaacaacaagttgtttaagggaacaaaatgctcaattgtgcaagtggtcgataagatcaagtccctcgctttcatgtgg 25130503  T
Q  126 ttgaaggagaaatttccttctcttctcttcaactatcatagttggtggctta 177  Q
    ||||||||||||||| || |||||  | ||||||||||| ||||||||||||    
T  25130502 ttgaaggagaaatttgctactctttccctcaactatcatggttggtggctta 25130451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 48336967 - 48337045
Alignment:
Q  95 tgataaagttaagtcggtgacgttcatgtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtgg 173  Q
    ||||||| |||||||| | || |||||||||||||||| ||||||||||||||||| ||||||  ||||||||||||||    
T  48336967 tgataaaattaagtcgctaactttcatgtggttgaaggcgaaatttccttctcttcccttcaatcatcatagttggtgg 48337045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 13137018 - 13137169
Alignment:
Q  26 gtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtgg 125  Q
    |||||||||||| |||||||  |||||||| || ||||| |  ||||||||||||||| |||||  | | || ||  |||||||| | || | || ||||    
T  13137018 gtgggaaatatgaaaagaaagaaataacagaatttttaacgcaaaagaatgctcaattatgcagacggtggacaagattaagtcgttaacttacaggtgg 13137117  T
Q  126 ttgaaggagaaatttccttctcttctcttcaactatcatagttggtggctta 177  Q
    ||||||| ||||||| || ||||| ||||||| |||||| ||||||||||||    
T  13137118 ttgaaggtgaaatttgctactcttttcttcaattatcatggttggtggctta 13137169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 343
Target Start/End: Complemental strand, 21204991 - 21204745
Alignment:
Q  94 ttgataaagttaagtcggtgacgttcatgtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgtt 193  Q
    |||||||| |||||||  | || |||||||||||||| | ||||||| |||| |||| |||||| |||||| ||||||||||||   | || || || ||    
T  21204991 ttgataaaattaagtcaatcactttcatgtggttgaatgcgaaattttcttcacttcccttcaattatcatggttggtggcttagttcattcacaatttt 21204892  T
Q  194 gggaataggctaatagttatctgctttctttactcactgttttttgtatccattgtaaatatttgttttgtgactctggtgtctttctctggtatacctt 293  Q
    ||  |||||||||||||||| || |||||||| | | || |||||||    | ||||||||    | |||||||||| |||| | ||||||  |||||||    
T  21204891 ggacataggctaatagttatttgttttctttagttaatgctttttgttgttactgtaaata---ctgttgtgactctagtgtttctctctgacatacctt 21204795  T
Q  294 atgctagacatgaccttttgacgtggtaatataattcattttagcctctt 343  Q
     ||||||  | ||  |||||| ||||||||||| ||||||||||| ||||    
T  21204794 gtgctagggaggattttttgatgtggtaatatatttcattttagcatctt 21204745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 37772872 - 37773048
Alignment:
Q  48 aataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtggttgaaggagaaatttccttctc 147  Q
    |||||||| || || || |||||| ||||  || |||| ||| || |||||||  |||||||| | || ||| | ||||||||  |||||||||||||||    
T  37772872 aataacagaatcttcaaaggcaaataatgtacagttgttcagatggttgataacattaagtcgctcactttcttatggttgaaaaagaaatttccttctc 37772971  T
Q  148 ttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttatctgctttcttt 224  Q
    ||| |||||| || ||| ||||||||||||  ||||| ||||| ||||| || || |||| ||||| ||| ||||||    
T  37772972 ttcccttcaattaccatggttggtggcttagtcctttcaccattttgggcattggttaattgttatttgcattcttt 37773048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 40154009 - 40153934
Alignment:
Q  103 ttaagtcggtgacgttcatgtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaa 178  Q
    |||||||||| || | || ||||||||||| ||||||| ||  ||||| ||| |||||||||||||||||||||||    
T  40154009 ttaagtcggtaacttacaggtggttgaaggtgaaatttgctaatcttccctttaactatcatagttggtggcttaa 40153934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 13157369 - 13157435
Alignment:
Q  26 gtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtg 92  Q
    ||||||||||||||||||||  || |||| ||| |||||||  |||||| |||||||| ||||||||    
T  13157369 gtgggaaatatggaaagaaagaaacaacaagatttttaatgcaaaagaaagctcaattatgcaggtg 13157435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 29521759 - 29521663
Alignment:
Q  117 ttcatgtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttat 213  Q
    |||||||||||||||| ||||| | |||||||||  ||||| ||||||  ||||||| |||| || || || |||||||| || | ||| |||||||    
T  29521759 ttcatgtggttgaaggcgaaatgtgcttctcttcctttcaattatcatgattggtggtttaatccgttcacaatgttgggcattgactagtagttat 29521663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 34787922 - 34787886
Alignment:
Q  307 ccttttgacgtggtaatataattcattttagcctctt 343  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  34787922 ccttttgatgtggtaatataattccttttagcctctt 34787886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 23 - 343
Target Start/End: Original strand, 39839839 - 39840161
Alignment:
Q  23 tacgtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatg 122  Q
    ||||||||||||||| |||||||| ||||| ||| | || |||| |||||| ||| | ||  | |||||| |||||||| ||||||||  | ||||||||    
T  39839839 tacgtgggaaatatgaaaagaaaaaaataataggttgttcaatgacaaagagtgccctatcctacaggtggttgataaaattaagtcgacgtcgttcatg 39839938  T
Q  123 tggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttatctgctttct 222  Q
    |||||||||  ||| ||||| ||||||| ||| ||||||||| ||||||||||||  || || ||||||||| | ||||| |||| ||||   | |||||    
T  39839939 tggttgaagacgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttgtgtataggttaattgttagtggttttct 39840038  T
Q  223 ttactcactgttttttg-tatccattgtaaatatttg-ttttgtgactctggtgtctttctctggtataccttatgctagacatgaccttttgacgtggt 320  Q
    | | | ||||||||||| | ||| ||||||||| ||| || |||||||||||||||||||||||| |||| || ||||||  | |||||||||| |||||    
T  39840039 taagttactgttttttgttttcccttgtaaataattgcttctgtgactctggtgtctttctctggcatacattgtgctagggaggaccttttgatgtggt 39840138  T
Q  321 aatataattcattttagcctctt 343  Q
    |||||||||| ||||||||||||    
T  39840139 aatataattcgttttagcctctt 39840161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 19315163 - 19314977
Alignment:
Q  27 tgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtggt 126  Q
    |||||||| ||||||||||  ||||||||| |||| || ||||||||||| ||  |  |||||||| |||||||  |||||||  | || || |||||||    
T  19315163 tgggaaatttggaaagaaagaaataacaggttattcaaaggcaaagaatggtcggtaatgcaggtggttgataagattaagtcactcacatttatgtggt 19315064  T
Q  127 tgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttat 213  Q
    |||||| ||||||| |||   ||| ||  || |||||| |||||||||||| ||| ||||||||| | || ||||||||||||||||    
T  19315063 tgaaggcgaaatttgctttatttccctggaattatcatggttggtggcttagcccgtttaccatgctaggcataggctaatagttat 19314977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 26778789 - 26778696
Alignment:
Q  117 ttcatgtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagt 210  Q
    |||||||||||||||| |||||||  |||||||  |||||| |||||| |||||||| |||  || ||||||||| | |  |||||||||||||    
T  26778789 ttcatgtggttgaaggtgaaatttttttctctttccttcaattatcatggttggtggtttagtccgtttaccatgctcgacataggctaatagt 26778696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 29994652 - 29994717
Alignment:
Q  122 gtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttac 187  Q
    ||||||||||| ||| ||||||| ||||| |||||| |||||| ||||||||||||| || |||||    
T  29994652 gtggttgaaggtgaagtttccttttcttcccttcaattatcatggttggtggcttaatccgtttac 29994717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 29651843 - 29651780
Alignment:
Q  143 ttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaa 206  Q
    |||||||||| |||| |||||| | ||||||||||  || |||||||||||||| |||||||||    
T  29651843 ttctcttctcctcaattatcatgggtggtggcttagtccgtttaccatgttgggcataggctaa 29651780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 15773108 - 15773160
Alignment:
Q  30 gaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaat 82  Q
    ||||| ||||||||||  ||||||| ||| |||||||| ||||||||||||||    
T  15773108 gaaatttggaaagaaagaaataacatgatctttaatggtaaagaatgctcaat 15773160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 23 - 343
Target Start/End: Original strand, 35590158 - 35590474
Alignment:
Q  23 tacgtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatg 122  Q
    |||||||||||| ||||||||||  ||||||||| | || ||||||||||||||||||||| | |||||| |||||||| |||||| | |||| |||| |    
T  35590158 tacgtgggaaatctggaaagaaagaaataacaggtttttcaatggcaaagaatgctcaattattcaggtggttgataaaattaagttgctgactttcagg 35590257  T
Q  123 tggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttatctgctttct 222  Q
    ||| |||||| ||| | ||| | ||||| ||||||||||||| |||||||||||| ||| ||  | || ||||| |||||||||||||||   |||||||    
T  35590258 tggctgaaggcgaagtatccgtgtcttcccttcaactatcatggttggtggcttagccccttctctattttgggcataggctaatagttaatggctttct 35590357  T
Q  223 ttactcactgttttttgtatccattgtaaatatttgttttgtgactctggtgtctttctctggtataccttatgctagacatgaccttttgacgtggtaa 322  Q
     |  ||||| |||||||| ||| |||||||||||||      ||||||||||| | ||||||| ||||||| ||| ||     | ||||||| |||||||    
T  35590358 gttttcactattttttgtttcccttgtaaatatttg----cagactctggtgtttctctctggcataccttgtgcaaggttgaatcttttgatgtggtaa 35590453  T
Q  323 tataattcattttagcctctt 343  Q
    |||||||||||||||||||||    
T  35590454 tataattcattttagcctctt 35590474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 2167652 - 2167588
Alignment:
Q  27 tgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggt 91  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||    
T  2167652 tgggaaatatggaaagaaaggaataacaggttatttaatggcaaagattgctcaattatgcaggt 2167588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 213
Target Start/End: Complemental strand, 36176741 - 36176616
Alignment:
Q  87 caggtgattgataaagttaagtcggtgacgttcatgtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaaccctttta 186  Q
    |||||| |||||||  |||||||| | || || |||||||| | || ||||||| |||||||||||||||| |||||| |||||||  |||  || ||||    
T  36176741 caggtggttgataagattaagtcgctcacatttatgtggtt-atggtgaaatttgcttctcttctcttcaattatcatggttggtgttttagtccattta 36176643  T
Q  187 ccatgttgggaataggctaatagttat 213  Q
    |||||||||| ||||||||||||||||    
T  36176642 ccatgttgggtataggctaatagttat 36176616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 30505752 - 30505840
Alignment:
Q  125 gttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttat 213  Q
    |||||||||||||||| |||| |||| |||||| |||||| |||||||| |||  |  |||||||||||||| ||||||||||||||||    
T  30505752 gttgaaggagaaattttcttcacttcccttcaattatcatggttggtggtttagtctgtttaccatgttgggcataggctaatagttat 30505840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 18948734 - 18948885
Alignment:
Q  27 tgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtggt 126  Q
    |||||||||||||||||||  ||||| || |  |||||||  ||||||||||||||| |||||||  | || ||| |||||||||| || | || |||||    
T  18948734 tgggaaatatggaaagaaagaaataatagaacttttaatgcgaaagaatgctcaattatgcaggttgtggacaaaattaagtcggtaacttacaggtggt 18948833  T
Q  127 tgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaa 178  Q
    ||| || ||||| | | ||||||  |||||| |||||  |||||||||||||    
T  18948834 tgagggtgaaatgttcatctcttgccttcaattatcacggttggtggcttaa 18948885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 45131196 - 45131106
Alignment:
Q  117 ttcatgtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaat 207  Q
    |||||||||||||||| ||||| | ||||||||| |||||| |||||| | ||||||||||  || ||||||||| |||| || |||||||    
T  45131196 ttcatgtggttgaaggggaaatatgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgctgggcattggctaat 45131106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 27009236 - 27009323
Alignment:
Q  126 ttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttat 213  Q
    ||||||| ||||||| ||||||||| |||||| || ||| ||||||||||||  || ||||||||  |||  ||||||||||||||||    
T  27009236 ttgaaggcgaaatttacttctcttcccttcaattaccatggttggtggcttagtccgtttaccatactggacataggctaatagttat 27009323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 9840798 - 9840891
Alignment:
Q  120 atgtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttat 213  Q
    ||||| |||||||  |||||| || ||||||  ||||| |||||| ||||||||||||| || || |||||| |||| ||| ||||||||||||    
T  9840798 atgtgattgaaggcaaaatttgctactcttccattcaattatcatggttggtggcttaatccgttcaccatgatgggcatatgctaatagttat 9840891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 41300574 - 41300518
Alignment:
Q  287 ataccttatgctagacatgaccttttgacgtggtaatataattcattttagcctctt 343  Q
    ||||||| ||||||  | || ||||||| ||||||||||||||||||||||||||||    
T  41300574 ataccttgtgctagggaggatcttttgatgtggtaatataattcattttagcctctt 41300518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 38409223 - 38409259
Alignment:
Q  307 ccttttgacgtggtaatataattcattttagcctctt 343  Q
    |||||||  ||||||||||||||||||||||||||||    
T  38409223 ccttttgttgtggtaatataattcattttagcctctt 38409259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 40347915 - 40348116
Alignment:
Q  24 acgtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgt 123  Q
    ||||||||||||||||||||||  ||||||||  | || ||||| ||||| ||| ||||| ||||| || | |||||| |||||||| ||||||||||||    
T  40347915 acgtgggaaatatggaaagaaagaaataacagactgttcaatggtaaagagtgcccaattatgcagatggtagataaaattaagtcgctgacgttcatgt 40348014  T
Q  124 ggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttatctgctttctt 223  Q
    ||||||||| ||| ||||| | |||||  |||||||||||| |||| |||||||||||||| || |||||||  |||| |||||||||||  ||||||||    
T  40348015 ggttgaaggcgaagtttccatttcttcctttcaactatcatggttgatggcttaaccctttcactatgttggacatagactaatagttattggctttctt 40348114  T
Q  224 ta 225  Q
    ||    
T  40348115 ta 40348116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 164
Target Start/End: Complemental strand, 49035556 - 49035424
Alignment:
Q  30 gaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtggttga 129  Q
    ||||| ||||||||||||||||||||  |||| ||||||||||||||||||||  |||||||| |||||||  |||| ||  |  | |||  ||||||||    
T  49035556 gaaatttggaaagaaaagaataacagattattcaatggcaaagaatgctcaatcttgcaggtggttgataatattaaatcactcgcattc--gtggttga 49035459  T
Q  130 aggagaaatttccttctcttctcttcaactatcat 164  Q
    ||| |||| || ||||||||| |||||| ||||||    
T  49035458 aggcgaaagttgcttctcttcccttcaattatcat 49035424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 213
Target Start/End: Complemental strand, 17116560 - 17116377
Alignment:
Q  30 gaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtggttga 129  Q
    ||||| ||||||||||  ||||||||| |||| || |||||||| |||||  |  | || ||| |||||||  |||||||  |  | || ||||||||||    
T  17116560 gaaatttggaaagaaagaaataacaggttattcaaaggcaaagattgctcggtaatacaagtggttgataagattaagtcactcgcatttatgtggttga 17116461  T
Q  130 aggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttat 213  Q
    ||| ||||| | ||||||||| |||||  |||||| ||||||||||||  |  |||||||| ||||| ||| ||||||||||||    
T  17116460 aggcgaaatatgcttctcttcccttcagttatcatggttggtggcttagtctgtttaccatattgggtataagctaatagttat 17116377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 260
Target Start/End: Original strand, 27076555 - 27076746
Alignment:
Q  71 agaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtggttgaaggagaaatttccttctcttctcttcaactatcatagttgg 170  Q
    |||||| |||||| | || ||| |||||||| || ||| | |||| |||| ||||| ||||| ||| ||||| ||| ||| ||||||||||||| |||||    
T  27076555 agaatgttcaattattcaagtggttgataaaattgagtagctgactttcaggtggtagaaggcgaagtttccatctattcccttcaactatcatggttgg 27076654  T
Q  171 tggcttaacc-cttttaccatgttgggaataggctaatagttatctgctttctttactcactg-ttttttgtatccattgtaaatatttgtt 260  Q
    ||||||| || | || || || | ||  ||||||||||||||||  ||||||| |  |||||| ||||| || ||| |||||||||||||||    
T  27076655 tggcttagcctcattcactatatcggacataggctaatagttattggctttctgttttcactgatttttggtttcccttgtaaatatttgtt 27076746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 260
Target Start/End: Complemental strand, 27201746 - 27201555
Alignment:
Q  71 agaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtggttgaaggagaaatttccttctcttctcttcaactatcatagttgg 170  Q
    |||||| |||||| | || ||| |||||||| || ||| | |||| |||| ||||| ||||| ||| ||||| ||| ||| ||||||||||||| |||||    
T  27201746 agaatgttcaattattcaagtggttgataaaattgagtagctgactttcaggtggtagaaggcgaagtttccatctattcccttcaactatcatggttgg 27201647  T
Q  171 tggcttaacc-cttttaccatgttgggaataggctaatagttatctgctttctttactcactg-ttttttgtatccattgtaaatatttgtt 260  Q
    ||||||| || | || || || | ||  ||||||||||||||||  ||||||| |  |||||| ||||| || ||| |||||||||||||||    
T  27201646 tggcttagcctcattcactatatcggacataggctaatagttattggctttctgttttcactgatttttggtttcccttgtaaatatttgtt 27201555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 29374866 - 29374715
Alignment:
Q  25 cgtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtg 124  Q
    ||||||| || ||||||||||  || || ||||| || | ||| ||| ||||||||||| | |||||| | |||||| |||| ||| || | || |||||    
T  29374866 cgtgggagatctggaaagaaagaaacaataggatcttcactggtaaacaatgctcaattttacaggtggtggataaaattaaatcgctgtcttttatgtg 29374767  T
Q  125 gttgaaggagaaatttccttctcttctcttcaactatcatagttggtggctt 176  Q
    |||||||| ||| |||||||||||||   ||||||||||| | |||||||||    
T  29374766 gttgaaggcgaagtttccttctcttcatctcaactatcatggctggtggctt 29374715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 34237188 - 34237272
Alignment:
Q  122 gtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaa 206  Q
    ||||||||||| |||||||| |  | ||| |||||| |||||| ||||||||||||  ||||| ||||||||||| |||||||||    
T  34237188 gtggttgaaggcgaaatttcatattattcccttcaattatcatggttggtggcttagtcctttcaccatgttgggcataggctaa 34237272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 196
Target Start/End: Original strand, 12092636 - 12092784
Alignment:
Q  48 aataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtggttgaaggagaaatttccttctc 147  Q
    |||||||| ||||| ||||  ||||||||||| ||  | |||||| | |||||  |||||||  |  | |||||||||||||||| ||||||| | ||||    
T  12092636 aataacagaatattcaatgctaaagaatgctcgatcttacaggtggtagataagattaagtcactttccttcatgtggttgaaggcgaaattttcctctc 12092735  T
Q  148 ttctcttcaactatcatagttggtggcttaacccttttaccatgttggg 196  Q
    ||| ||| ||||||||| | | ||||||||  || ||||| ||||||||    
T  12092736 ttcccttaaactatcatggatagtggcttagtccatttactatgttggg 12092784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 16560029 - 16560084
Alignment:
Q  26 gtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaa 81  Q
    ||||||||||||||||||||  ||||||||| |||| ||||| |||||||| ||||    
T  16560029 gtgggaaatatggaaagaaagaaataacaggttattcaatggaaaagaatgttcaa 16560084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 16605633 - 16605578
Alignment:
Q  26 gtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaa 81  Q
    ||||||||||||||||||||  ||||||||| |||| ||||| |||||||| ||||    
T  16605633 gtgggaaatatggaaagaaagaaataacaggttattcaatggaaaagaatgttcaa 16605578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 38153939 - 38153994
Alignment:
Q  122 gtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggctta 177  Q
    ||||||||||| |||||||||| |||||| ||| ||||| ||||| ||||||||||    
T  38153939 gtggttgaaggtgaaatttcctactcttccctttaactaccatagatggtggctta 38153994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 37917943 - 37917905
Alignment:
Q  305 gaccttttgacgtggtaatataattcattttagcctctt 343  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  37917943 gaccttttgttgtggtaatataattcattttagcctctt 37917905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 343
Target Start/End: Complemental strand, 43026191 - 43026157
Alignment:
Q  309 ttttgacgtggtaatataattcattttagcctctt 343  Q
    |||||| ||||||||||||||||||||||||||||    
T  43026191 ttttgatgtggtaatataattcattttagcctctt 43026157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 29374587 - 29374555
Alignment:
Q  305 gaccttttgacgtggtaatataattcattttag 337  Q
    |||||||||| ||||||||||||||||||||||    
T  29374587 gaccttttgatgtggtaatataattcattttag 29374555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 27 - 177
Target Start/End: Complemental strand, 8462672 - 8462523
Alignment:
Q  27 tgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtggt 126  Q
    |||||||| | ||||||||  |||||||| ||||| || ||||||||||| ||  ||||||||||| |||||||  |||||||  | || ||||||||||    
T  8462672 tgggaaatttagaaagaaagaaataacag-atattcaaaggcaaagaatgttcggttgtgcaggtggttgataagattaagtcactcacattcatgtggt 8462574  T
Q  127 tgaaggagaaatttccttctcttctcttcaactatcatagttggtggctta 177  Q
    |||||| ||||||| ||||||||| |||||| |||||| ||||||||||||    
T  8462573 tgaaggcgaaatttgcttctcttcccttcaattatcatggttggtggctta 8462523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 341
Target Start/End: Original strand, 21523973 - 21524082
Alignment:
Q  229 actgttttttgtatccattgtaaatatttgttttgtgactctggtgtctttctctggtataccttatgctagacatgaccttttgacgtggtaatataat 328  Q
    ||||| |||| | ||||||||||||||||   ||||||||||||||||||||||||  ||||||| || |||  | |||||||||| |||||||||||||    
T  21523973 actgtgttttatttccattgtaaatattt---ttgtgactctggtgtctttctctgacataccttgtgttaggaaggaccttttgatgtggtaatataat 21524069  T
Q  329 tcattttagcctc 341  Q
    |||||||||||||    
T  21524070 tcattttagcctc 21524082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 39435610 - 39435490
Alignment:
Q  30 gaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtggttga 129  Q
    ||||| ||||||||||  ||||||| | |||| |||| ||||||||||||  || |||||||| |||||||  |||||||  |   ||||||||||||||    
T  39435610 gaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgagttcatgtggttga 39435511  T
Q  130 aggagaaatttccttctcttc 150  Q
    ||| ||||||| |||||||||    
T  39435510 aggcgaaatttgcttctcttc 39435490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 37929141 - 37929232
Alignment:
Q  122 gtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttat 213  Q
    ||||||||||| |||||||||| |||||| ||| ||||||||| ||||||||||||  || || ||| |||| || ||||||| ||||||||    
T  37929141 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggctgatagttat 37929232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 21523889 - 21523949
Alignment:
Q  117 ttcatgtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggctta 177  Q
    |||||||||||||| | ||| ||||| ||||||| ||||||||||||| ||||||| ||||    
T  21523889 ttcatgtggttgaaagcgaagtttccatctcttcccttcaactatcatggttggtgactta 21523949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 16840330 - 16840422
Alignment:
Q  117 ttcatgtggttgaaggagaaatttccttctcttctcttcaa--ctatcatagttggtggcttaacccttttaccatgttgggaataggctaat 207  Q
    ||||||||||||||||||||||   ||||||||| ||||||   ||||||  ||||||||||| ||| || ||||| ||||| ||||| ||||    
T  16840330 ttcatgtggttgaaggagaaatactcttctcttcccttcaattatatcatgcttggtggcttagcccattcaccattttgggcataggttaat 16840422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 39 - 213
Target Start/End: Original strand, 44675046 - 44675220
Alignment:
Q  39 aaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtggttgaaggagaaat 138  Q
    |||||||  ||||||||| |||| |||||| |||||||||| || ||||| ||| |||||||  ||||| |  |  | |||||||||||||||| |||||    
T  44675046 aaagaaataaataacaggttattcaatggctaagaatgctcgatcgtgcaagtggttgataagattaagccacttgcattcatgtggttgaaggcgaaat 44675145  T
Q  139 ttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttat 213  Q
    || |||| |||| |||||| |||||| ||||||||||||  || |||| ||||||||| |||| |||||||||||    
T  44675146 ttgcttcccttcccttcaattatcatggttggtggcttagtccgtttatcatgttgggcatagactaatagttat 44675220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 213
Target Start/End: Original strand, 52626459 - 52626631
Alignment:
Q  39 aaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtggttgaaggagaaat 138  Q
    |||||||  ||||||||  ||| ||||| |||||||||||| ||| ||||||||||||||||  ||||| |  | |  |||||||||||| |||  ||||    
T  52626459 aaagaaagaaataacagactatctaatgacaaagaatgctcgattatgcaggtgattgataagattaagcctataa--ttcatgtggttggaggcaaaat 52626556  T
Q  139 ttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttat 213  Q
    |   |||||||| |||||| |||||| ||||||||||||  || |||||||| ||| | |||||||||| |||||    
T  52626557 tcgtttctcttcccttcaattatcatggttggtggcttagtccatttaccatattgcgtataggctaattgttat 52626631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 4889383 - 4889539
Alignment:
Q  21 attacgtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttca 120  Q
    |||||||| ||||| | ||||||||  ||||||||| |||| ||| ||||||||||||||||     | ||| |||||||| |||||||| |  | ||||    
T  4889383 attacgtgagaaatttagaaagaaagaaataacaggttattcaatagcaaagaatgctcaatgtcttatgtggttgataaaattaagtcgcttgcattca 4889482  T
Q  121 tgtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggctta 177  Q
    ||||||| |||| ||| || |||||||||| ||| ||||||||| | ||||| ||||    
T  4889483 tgtggttcaaggcgaagttcccttctcttccctttaactatcatgggtggtgactta 4889539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 44653967 - 44653858
Alignment:
Q  233 ttttttgtatccattgtaaatatttgttttgtgactctggtgtctttctctggtataccttatgctagacatgaccttttgacgtggtaatataattcat 332  Q
    |||||||| ||| |||||||||||||| |   ||||||||||| |||| || | |||||||||||||   | ||||||||||  ||||||||||||| ||    
T  44653967 ttttttgtttcccttgtaaatatttgtatatcgactctggtgtttttccctagcataccttatgctacgga-gaccttttgatatggtaatataatttat 44653869  T
Q  333 tttagcctctt 343  Q
    |||||||||||    
T  44653868 tttagcctctt 44653858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 40708601 - 40708441
Alignment:
Q  29 ggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtggttg 128  Q
    |||||| || |||||||  ||||||| | |||||||||| |||||||||   |||||||||||| | || ||| |||||||  |||| ||||||||||||    
T  40708601 ggaaatttgaaaagaaagaaataacaagttatttaatggtaaagaatgccagattgtgcaggtggtagacaaaattaagtctctgactttcatgtggttg 40708502  T
Q  129 aaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccat 190  Q
     ||| ||||| |  |||||||| |||||| ||||||  | |||||||||  || ||||||||    
T  40708501 -aggtgaaatatgtttctcttcccttcaattatcatgttcggtggcttagtccgtttaccat 40708441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 26260785 - 26260869
Alignment:
Q  122 gtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaa 206  Q
    ||||||||||| ||| ||| ||||||||| |||||| |||||| | ||||||||||  || |||||||||||||| || ||||||    
T  26260785 gtggttgaaggcgaagtttgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgttgggcattggctaa 26260869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 42450783 - 42450636
Alignment:
Q  31 aaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtggttgaa 130  Q
    |||||||||||||||  ||||| || |  || ||||  ||||||||||||||| |||||||  | |||||| |||||||||| || | || ||||||||     
T  42450783 aaatatggaaagaaagaaataatagaactttcaatgcgaaagaatgctcaattatgcaggttgtggataaaattaagtcggtaacttacaggtggttgag 42450684  T
Q  131 ggagaaatttccttctcttctcttcaactatcatagttggtggcttaa 178  Q
    || ||||| | | ||||||  |||||| |||||  |||||||||||||    
T  42450683 ggtgaaatgtacatctcttgccttcaattatcacggttggtggcttaa 42450636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Complemental strand, 8440069 - 8440034
Alignment:
Q  308 cttttgacgtggtaatataattcattttagcctctt 343  Q
    |||||| |||||||||||||||||||||||||||||    
T  8440069 cttttgtcgtggtaatataattcattttagcctctt 8440034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 22583260 - 22583181
Alignment:
Q  117 ttcatgtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttggg 196  Q
    |||||||||||||||| ||||||| | ||||||| ||| |||||  |||| ||||||||||  || ||||| ||||||||    
T  22583260 ttcatgtggttgaaggcgaaatttgcctctcttcccttaaactagtatagatggtggcttagtccatttactatgttggg 22583181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 25392482 - 25392296
Alignment:
Q  27 tgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtggt 126  Q
    |||||||| ||||||||||   |||||| | |||| || ||||||||||| |   |  ||||| ||||||||||  |||||||| |  | |  |||||||    
T  25392482 tgggaaatttggaaagaaagagataacaagttattcaaaggcaaagaatgtttggtaatgcagatgattgataagattaagtcgctcgcatgtatgtggt 25392383  T
Q  127 tgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttat 213  Q
    |||||| ||| ||| ||| | ||| |||||| |||||| ||| ||||||||   | ||||||||| ||||||||  |||||||||||    
T  25392382 tgaaggcgaagttttcttattttcccttcaattatcattgttagtggcttagttcgtttaccatgatgggaataaactaatagttat 25392296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 9484878 - 9484930
Alignment:
Q  121 tgtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtgg 173  Q
    |||||||||||| |||||||  |||||||| |||||| |||||| ||||||||    
T  9484878 tgtggttgaaggcgaaatttgtttctcttcccttcaattatcatggttggtgg 9484930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 25845586 - 25845737
Alignment:
Q  26 gtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtgg 125  Q
    ||||||||| ||||||||||  || ||||   ||||||| |||||||| || |||||||| |||||| |||||||| |||||||| |  | |||||||||    
T  25845586 gtgggaaatttggaaagaaagaaacaacatattatttaaaggcaaagattgttcaattgttcaggtggttgataaaattaagtcgctctctttcatgtgg 25845685  T
Q  126 ttgaaggagaaatttccttctcttctcttcaactatcatagttggtggctta 177  Q
    ||||||| ||| ||||||||||| | ||| ||||| ||| ||||||||||||    
T  25845686 ttgaaggcgaagtttccttctctgcccttgaactaccatggttggtggctta 25845737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 25408703 - 25408889
Alignment:
Q  26 gtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgtgg 125  Q
    ||||||||| ||||||||||  |||||||  || |||||||  || |||||| ||||| || || || | |||||  |||||||  | || ||| |||||    
T  25408703 gtgggaaatctggaaagaaagaaataacaacat-tttaatgaaaaggaatgcacaattatgaagatggtcgataagattaagtctataacattcgtgtgg 25408801  T
Q  126 ttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttat 213  Q
    ||||||| ||||||  ||||  ||  |||||| |||||| ||||||||||||  || |||||||||||||| |||||||||| |||||    
T  25408802 ttgaaggcgaaattcacttcaatttccttcaattatcatggttggtggcttagtccatttaccatgttgggtataggctaattgttat 25408889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 334
Target Start/End: Complemental strand, 16125015 - 16124925
Alignment:
Q  245 attgtaaatatttgttttgtgactctggtgtc-tttctctggtataccttatgctagacatgaccttttgacgtggtaatataattcattt 334  Q
    ||||||||||||| |||||||| ||||||||| ||||||||  ||||||| || |||  | ||||||||||  ||||||||||||||||||    
T  16125015 attgtaaatatttattttgtgattctggtgtcttttctctgacataccttgtgttagggaggaccttttgatatggtaatataattcattt 16124925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 177
Target Start/End: Original strand, 47160924 - 47161077
Alignment:
Q  24 acgtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatgt 123  Q
    ||||||||||| ||||| |||| ||||||||| || ||||||  ||| ||| |||||||| |||| ||| | ||||   |||||| | | || || | ||    
T  47160924 acgtgggaaatttggaaggaaaggaataacagaatttttaatcccaaggaaagctcaattttgcaagtggtggataggattaagttgttaacttttaagt 47161023  T
Q  124 ggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggctta 177  Q
    ||||||||| ||| |||||||||||||  ||||| || ||| ||||||||||||    
T  47161024 ggttgaaggtgaagtttccttctcttccattcaattaccatggttggtggctta 47161077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 8074792 - 8074751
Alignment:
Q  48 aataacaggatatttaatggcaaagaatgctcaattgtgcag 89  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  8074792 aataacaggttatttaatggcaaagaatgctcagttgtgcag 8074751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 33692967 - 33692876
Alignment:
Q  120 atgtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagtt 211  Q
    ||||||||||||| |||||||    | |||| |||||||| |||| |||||||||||| ||| || |||||| |||| ||||| ||||||||    
T  33692967 atgtggttgaaggtgaaatttaacacgcttcccttcaactttcatggttggtggcttagcccgttcaccatgctgggcataggttaatagtt 33692876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 64451 - 64272
Alignment:
Q  23 tacgtgggaaatatggaaagaaaagaataacaggatatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcggtgacgttcatg 122  Q
    |||||| ||||| ||||||||||  ||||||||| ||||||||||||| ||  | ||||||   |||||| | |||||| |||||||  |  | ||| ||    
T  64451 tacgtgtgaaatttggaaagaaagaaataacaggttatttaatggcaaggatagttcaattcctcaggtggtagataaaattaagtccctcgctttcttg 64352  T
Q  123 tggttgaaggagaaatttccttctcttctcttcaactatcatagttggtggcttaacccttttaccatgttgggaatagg 202  Q
    ||||||||||||||||  |||||||||  |||||| ||||||  |||||||||||  ||||| ||||| ||||| |||||    
T  64351 tggttgaaggagaaatacccttctctttccttcaattatcatgcttggtggcttagtcctttcaccattttgggcatagg 64272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 24489 - 24567
Alignment:
Q  95 tgataaagttaagtcggtgacgttcatgtggttgaaggagaaatttccttctcttctcttcaactatcatagttggtgg 173  Q
    ||||||| |||||||| | || |||||||||||||||| ||||||||||||||||| ||||||  ||||||||||||||    
T  24489 tgataaaattaagtcgctaactttcatgtggttgaaggcgaaatttccttctcttcccttcaatcatcatagttggtgg 24567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University