View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20497_high_12 (Length: 407)
Name: NF20497_high_12
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 390
Target Start/End: Complemental strand, 45933082 - 45932714
Alignment:
| Q |
14 |
catttcccaccctatcaagggctagcttattccatgttaacaactgtttgcaacattgcatgctgcttaatgcttaatgcttctcttccatgaattaagc |
113 |
Q |
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| T |
45933082 |
catttcccaccctatcaagggctagcttattccatgttaacaactgtttgcaacattgcatgctgcttaatgctt-------ctcttccatgaattaagc |
45932990 |
T |
|
| Q |
114 |
taactttcaaatttataagagaagtttcattttcagcttttcaaagatgctagtattgtttcaaggttcaatgcaaattaattacggcatttaattttat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45932989 |
taactttcaaatttataagagaagtttcattttcagcttttcaaagatgctagtattgtttcaaggttcaatgcaaattaattacggcatttaattttat |
45932890 |
T |
|
| Q |
214 |
attgggaaatggaatgtagtgccagtgaagaaaaagctagtggtaaattatcatagggtgggtgcagttaagagttaagactcttctgttaaaaagagtt |
313 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45932889 |
attgggaaatggaatgtagagccagtgaagaaaaagctagtggtaaattatcatagggtgggtgcagttaagagttaagactcttctgttaaaaagagtt |
45932790 |
T |
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| Q |
314 |
aagactcttccggtaccttctattctatgtatgnnnnnnnnncatagggtttgtctcatctcaccttcaccttcatg |
390 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45932789 |
gagactcttccggtaccttctattctatgtatg-aaaaaaaacatagggtttgtctcatctcaccttcaccttcatg |
45932714 |
T |
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