View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20497_high_14 (Length: 389)
Name: NF20497_high_14
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 22 - 369
Target Start/End: Complemental strand, 20910161 - 20909814
Alignment:
| Q |
22 |
aaccctggacgacgaaagaaagttttctcatctcttaaccccttatcatcactaaccccaagcttccttgcatcaatgctactacaaacaagagcaccaa |
121 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20910161 |
aaccctggacgccgatagaaagttttctcatctcttaaccccttatcatcactaaccccaagcttccttgcatcaatgctactacaaacaagagcaccaa |
20910062 |
T |
|
| Q |
122 |
gaagcacaaaaagcagaacgcttgaacttgaagccatcttttgctataactagaaagtaaaagaactcgaaaatatttggtgtggnnnnnnngaagtgat |
221 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20910061 |
gaagcacaaaaagcagaatgcttgaacttgaagccatcttttgctataactagaaagtaaaagaactcgaaaatatttggtgtggaaaaaaagaagtgat |
20909962 |
T |
|
| Q |
222 |
gctagggtttatatagcaaatgccaaaggccaaggtttaaccaaaacattaattaagaactttgaaattactatgagaacgctttaattttagggcaact |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20909961 |
gctagggtttatatagcaaatgccaaaggccaaggtttaaccaaaacattaattaagaactttgaaattactatgagaacgctttaattttagggcaact |
20909862 |
T |
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| Q |
322 |
tcttaaccatgcaagaacgcgttggatatacataaatgctttcaactg |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20909861 |
tcttaaccatgcaagaacgcgttggatatacataaatgctttcaactg |
20909814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 22 - 369
Target Start/End: Complemental strand, 20912904 - 20912557
Alignment:
| Q |
22 |
aaccctggacgacgaaagaaagttttctcatctcttaaccccttatcatcactaaccccaagcttccttgcatcaatgctactacaaacaagagcaccaa |
121 |
Q |
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||||| |||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20912904 |
aacccaggacgatgaaagaaagttttctcatcatttaaccccttatca---ctaaccccaagcttccttgcatcaatgctactgcaaacaagagcaccaa |
20912808 |
T |
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| Q |
122 |
gaagcacaaaaagcagaacgcttgaacttgaagccatcttttgctataa----ctagaaagtaaaa-gaactcgaaaatatttggtgtggnnnnnnngaa |
216 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||| | |||||||||||||||| ||| |
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| T |
20912807 |
gaagcacaaaaagcagaacacttgaacttgaagccatcttgtgctatatatgtctagaaagtaaaaagaagtttaaaatatttggtgtggaaaaaatgaa |
20912708 |
T |
|
| Q |
217 |
gtgatgctagggtttatatagcaaatgccaaaggccaaggtttaaccaaaacattaattaagaactttgaaattactatgagaacgctttaattttaggg |
316 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
20912707 |
gtgatgctagggtttatatagcaaatgccaagggc-aaggtttaaccaaaacattaattaggaactttgaaattactatgagaatgctttaattttaggg |
20912609 |
T |
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| Q |
317 |
-caacttcttaaccatgcaagaacgcgttggatatacataaatgctttcaactg |
369 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20912608 |
acaacttcttaaccatgcaagaacgcgttgg--atacataaatgctttcaactg |
20912557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 22 - 369
Target Start/End: Complemental strand, 20921022 - 20920675
Alignment:
| Q |
22 |
aaccctggacgacgaaagaaagttttctcatctcttaaccccttatcatcactaaccccaagcttccttgcatcaatgctactacaaacaagagcaccaa |
121 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20921022 |
aacccaggacgatgaaagaaagttttctcatcatttaaccccttatca---ctaaccccaagcttccttgcatcaatgctactgcaaacaagagcaccaa |
20920926 |
T |
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| Q |
122 |
gaagcacaaaaagcagaacgcttgaacttgaagccatcttttgctataa----ctagaaagtaaaa-gaactcgaaaatatttggtgtggnnnnnnngaa |
216 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||| | |||||||||||||||| ||| |
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| T |
20920925 |
gaagcacaaaaagcagaacacttgaacttgaagccatcttgtgctatatatgtctagaaagtaaaaagaagtttaaaatatttggtgtggaaaaaatgaa |
20920826 |
T |
|
| Q |
217 |
gtgatgctagggtttatatagcaaatgccaaaggccaaggtttaaccaaaacattaattaagaactttgaaattactatgagaacgctttaattttaggg |
316 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
20920825 |
gtgatgctagggtttatatagcaaatgccaagggc-aaggtttaaccaaaacattaattaggaactttgaaattactatgagaatgctttaattttaggg |
20920727 |
T |
|
| Q |
317 |
-caacttcttaaccatgcaagaacgcgttggatatacataaatgctttcaactg |
369 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20920726 |
acaacttcttaaccatgcaagaacgcgttgg--atacataaatgctttcaactg |
20920675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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