View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20497_high_16 (Length: 370)

Name: NF20497_high_16
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20497_high_16
NF20497_high_16
[»] chr3 (1 HSPs)
chr3 (176-360)||(1310350-1310534)
[»] scaffold0003 (1 HSPs)
scaffold0003 (18-124)||(9132-9239)
[»] chr7 (1 HSPs)
chr7 (18-124)||(16420420-16420527)
[»] chr8 (3 HSPs)
chr8 (18-124)||(5538238-5538345)
chr8 (36-124)||(44667720-44667810)
chr8 (62-112)||(6816946-6816995)
[»] chr6 (2 HSPs)
chr6 (63-124)||(3508666-3508727)
chr6 (57-124)||(34518725-34518791)
[»] chr4 (1 HSPs)
chr4 (62-111)||(28657267-28657313)
[»] scaffold0004 (1 HSPs)
scaffold0004 (62-111)||(189034-189082)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 176 - 360
Target Start/End: Original strand, 1310350 - 1310534
Alignment:
Q  176 caaacattcaccccaaagagacaagtaagaagtatttcaacctcttttccttcatctttacaacttcatagctattattattagaccaaaactattcctt 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  1310350 caaacattcaccccaaagagacaagtaagaagtatttcaacctcttttccttcatctttacaatttcataactattattattagaccaaaactattcctt 1310449  T
Q  276 tctagagaacctaccttttctaccatcaaattaaatcttggtttttgttgagaaaaaattgatttattctaagtgtagatttctt 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1310450 tctagagaacctaccttttctaccatcaaattaaatcttggtttttgttgagaaaacattgatttattctaagtgtagatttctt 1310534  T

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Target: scaffold0003 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 9132 - 9239
Alignment:
Q  18 ccatattgtgaggaaataagttagtgggagaattattagtaaccg-ttcctattctttttcacacacacccctttctatactttgaagaacaaaaacaaa 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9132 ccatattgttaggaaataagttagtgggagaattattagtaaccggttcctattctttttcacacacacccctttctatactttgaagaacaaaaacaaa 9231  T
Q  117 atacatag 124  Q
    ||||||||    
T  9232 atacatag 9239  T

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Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 16420420 - 16420527
Alignment:
Q  18 ccatattgtgaggaaataagttagtgggagaattattagtaaccg-ttcctattctttttcacacacacccctttctatactttgaagaacaaaaacaaa 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16420420 ccatattgttaggaaataagttagtgggagaattattagtaaccggttcctattctttttcacacacacccctttctatactttgaagaacaaaaacaaa 16420519  T
Q  117 atacatag 124  Q
    ||||||||    
T  16420520 atacatag 16420527  T

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Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 5538345 - 5538238
Alignment:
Q  18 ccatattgtgaggaaataagttagtgggagaattattagtaacc-gttcctattctttttcacacacacccctttctatactttgaagaacaaaaacaaa 116  Q
    ||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5538345 ccatattgttaggaaataagctagtgggagaattattagtaaccagttcctattccttttcacacacacccctttctatactttgaagaacaaaaacaaa 5538246  T
Q  117 atacatag 124  Q
    ||||||||    
T  5538245 atacatag 5538238  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 44667720 - 44667810
Alignment:
Q  36 agttagtgggagaattattag--taaccg-ttcctattctttttcacacacacccctttctatactttgaagaacaaaaacaaaatacatag 124  Q
    ||||||||||||| |||||||  |||||| ||||||||| ||||||||||||| | || |||| ||||||||||||||||||||| ||||||    
T  44667720 agttagtgggagagttattagaataaccggttcctattcattttcacacacactcatt-ctatgctttgaagaacaaaaacaaaagacatag 44667810  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 6816946 - 6816995
Alignment:
Q  62 gttcctattctttttcacacacacccctttctatactttgaagaacaaaaa 112  Q
    |||| |||||||||| |||||||||| || |||||||||||||||||||||    
T  6816946 gttcttattctttttaacacacacccatt-ctatactttgaagaacaaaaa 6816995  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 3508666 - 3508727
Alignment:
Q  63 ttcctattctttttcacacacacccctttctatactttgaagaacaaaaacaaaatacatag 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3508666 ttcctactctttttcacacacacccctttctatactttgaagaacaaaaacaaaatacatag 3508727  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 34518791 - 34518725
Alignment:
Q  57 taaccgttcctattctttttcacacacacccctttctatactttgaagaacaaaaacaaaatacatag 124  Q
    |||| ||||||||||||||||||||| |||| || |||||||||||||||||||| ||||||||||||    
T  34518791 taacggttcctattctttttcacacatacccatt-ctatactttgaagaacaaaatcaaaatacatag 34518725  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 28657313 - 28657267
Alignment:
Q  62 gttcctattctttttcacacacacccctttctatactttgaagaacaaaa 111  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||    
T  28657313 gttcctattctttttcacacac---ccattctatactttgaagaacaaaa 28657267  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 189082 - 189034
Alignment:
Q  62 gttcctattctttttcacacacacccctttctatactttgaagaacaaaa 111  Q
    ||||||||| ||||||||||| |||| || ||||||||||||||||||||    
T  189082 gttcctattgtttttcacacatacccatt-ctatactttgaagaacaaaa 189034  T

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