View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20497_high_17 (Length: 360)
Name: NF20497_high_17
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 41679691 - 41679344
Alignment:
| Q |
1 |
aataatcatcactctcccat----atatacgattagtcgaaatttgattagttaaatatcatattcatgatacatttcataacttaatttgtttaaacta |
96 |
Q |
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| T |
41679691 |
aataatcatcactctcccatgcatatatacgattagtcgaaatttgattagttaaatatcatattcatgatacatttcataacttaatttgtttaaacta |
41679592 |
T |
|
| Q |
97 |
atgctaatatacaaatcaatgatcaggtactaaggaagaagcatggaggaatttgtggacaatatcattacacaagatatttgctgcaatagcaatggga |
196 |
Q |
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| T |
41679591 |
atgctaatatacaaatcaatgatcaggtactaaggaagaagcatggaggaatttgtggacaatatcattacacaagatatttgctgcaatagcaatggga |
41679492 |
T |
|
| Q |
197 |
atcgcattgctaagaatgttaccaaaaagaccattaataacaacagcaggatattcatttgcatttgctatctctagcccaattggcgtaggaattggaa |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41679491 |
atcgcattgctaagaatgttaccaaaaagaccattaataacaacagcaggatattcatttgcatttgctatctctagcccaattggcgtaggaattggaa |
41679392 |
T |
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| Q |
297 |
ttgcaatcgacgcaacaacagaaggaaaaacagcggattggatgtatg |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41679391 |
ttgcaatcgacgcaacaacagaaggaaaaacagcggattggatgtatg |
41679344 |
T |
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