View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20497_high_26 (Length: 257)
Name: NF20497_high_26
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 4 - 175
Target Start/End: Complemental strand, 3144720 - 3144550
Alignment:
| Q |
4 |
agaagcaaaggagaagaacatgaaactaacctgacaaacttgccatcagattgaagtgcatcaggctttgaacccaacttcataaacttcannnnnnnnn |
103 |
Q |
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| T |
3144720 |
agaaacaaaagagaagaacatgaaactaacctgacaaacttgccatcagattgaagtgcatcaggctttgaacccaacttcataaacttca-tttttgtt |
3144622 |
T |
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| Q |
104 |
nnnnnnnnncttgaaaaccaaacaaagaaagtagggtcacgtatgttgagaagtaagacagtgaaagaaagc |
175 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3144621 |
tctttttttcttgaaaaccaaacaaagaaagtaggatcacgtatgttgagaagtaagacagtgaaagaaagc |
3144550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 3144501 - 3144469
Alignment:
| Q |
225 |
cgtgttaaggtaatgaaggaaatgaatgcagtt |
257 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3144501 |
cgtgttaaggtaatgaaggaaatgaatgcagtt |
3144469 |
T |
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