View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20497_high_4 (Length: 579)
Name: NF20497_high_4
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 12 - 564
Target Start/End: Original strand, 2662897 - 2663451
Alignment:
| Q |
12 |
gagatgaatatgacctcattcttgaattcttgcaagccttgtccagaattctccgagagccttttcactgctatttcttgtccagatggaagctggccct |
111 |
Q |
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| T |
2662897 |
gagatgaatatgacctcattcttgaattcttgcaagccttgtccagaattctccgagagccttttcactgctatttcttgtccagatggaagctggccct |
2662996 |
T |
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| Q |
112 |
aaaagttacaacagatccaagatattatcatagttgttgtaaaactaagagggtaagtagctttggtaccttttcttgatggaaaaatcaaccaaacata |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2662997 |
aaaagttacaacagatccaagatattatcatagttgttgtaaaactaagagggtaagtagctttggtaccttttcttgatggaaaaatcaaccaaactta |
2663096 |
T |
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| Q |
212 |
ctaaaacttgttttgcaagaaattggacagcttcaactggcacttcgaatgattagatttggatcaactaattacaactactaaaagatagatgacaata |
311 |
Q |
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| T |
2663097 |
ctaaaacttgttttgcaagaaattggaaagcttcaactggcactttgaatgattagatttggatcaactaattacaactactaaaagatagatgataata |
2663196 |
T |
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| Q |
312 |
acctcaaaccaaacatgaccttaaatttttatttgtagaaaatagtactattttgaagcgtaccatagtggaaaaatatgttggaaagaa--ataacatc |
409 |
Q |
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| T |
2663197 |
acctcaaaccaaacatgaccttaaatttttatttgtagaaaatagtactattttgaagtgtaccatagtggtaaaatatgttggaaagaaatataacatc |
2663296 |
T |
|
| Q |
410 |
aaagcttaaaagtttagattaaattaattgtagttgttgaattttttcctatcatgcctactggaagaaagttgttatacactagtatgtttgtgtagag |
509 |
Q |
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| T |
2663297 |
aaagcttaaaagtttagattaaattaattgtagttgttgaattttttcctatcatgcctactggaagaaagttgttatacattagtatgtttgtgtagag |
2663396 |
T |
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| Q |
510 |
gaccaaaataatcacaaagagaaatagcaatttactttgtatacaggaccaaatc |
564 |
Q |
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| T |
2663397 |
gaccaaaataatcacaaagagaaatagcaatttactttgtatacaggaccaaatc |
2663451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 3979461 - 3979525
Alignment:
| Q |
27 |
tcattcttgaattcttgcaagccttgtccagaattctccgagagccttttcactgctatttcttg |
91 |
Q |
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| T |
3979461 |
tcatttttgaattcctgcaacccttgtccagacttctttgaaagccttttcacagctatctcttg |
3979525 |
T |
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