View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20497_low_1 (Length: 814)
Name: NF20497_low_1
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Original strand, 12748595 - 12749040
Alignment:
| Q |
18 |
gcatttgcatgcttggatgtggaagacagcaaaagcacacaatgtacgattaatgggcaatctctagtgtgagagtgaaactacgatatcatattgtact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12748595 |
gcatttgcatgcttggatgtggaagacagcaaaagcacacaatgtacgattaatgggcaatctctagtgtgagagtgaaactacgatatcatattgtact |
12748694 |
T |
|
| Q |
118 |
actgcgcttttgctgtgtaagatagctttgtgtgtttacataatgggccacactgtagggacttccaacttcactaaccatgtgcttcaaccactctttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12748695 |
actgcgcttttgctgtgtaagatagctttgtgtgtttaaataatgggccacactgtagggacttccaacttcactaaccatgtgcttcaaccactctttg |
12748794 |
T |
|
| Q |
218 |
ctttgaacttgccatgccaatccctataaatacccttcaacttctccaattataaaccaagctctagttttttgggagttcaccttcaaagctcaatctc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12748795 |
ctttgaacttgccatgccaatccctataaatacccttcaacttctccaattataaaccaagctctagttttttgggagttcaccttcaaagctcaatctc |
12748894 |
T |
|
| Q |
318 |
atggcttctatacatagagttcccattgttgctttctcagtactactggctttaagtttatgttctgctagaagggctctactcacttttgatgccggag |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12748895 |
atggcttctatacatagagttcccattgttgctttcttagtactactggctttaagtttatgttctgctagaagggctctactcacttttgatgccggag |
12748994 |
T |
|
| Q |
418 |
gtggctatggtttaggccatggcattgttggtggaggtcatggagg |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12748995 |
gtggctatggtttaggccatggcattgttggtggaggtcatggagg |
12749040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Original strand, 12811675 - 12812120
Alignment:
| Q |
18 |
gcatttgcatgcttggatgtggaagacagcaaaagcacacaatgtacgattaatgggcaatctctagtgtgagagtgaaactacgatatcatattgtact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12811675 |
gcatttgcatgcttggatgtggaagacagcaaaagcacacaatgtacgattaatgggcaatctctagtgtgagagtgaaactacgatatcatattgtact |
12811774 |
T |
|
| Q |
118 |
actgcgcttttgctgtgtaagatagctttgtgtgtttacataatgggccacactgtagggacttccaacttcactaaccatgtgcttcaaccactctttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12811775 |
actgcgcttttgctgtgtaagatagctttgtgtgtttacataatgggccacactgtagggacttccaacttcactaaccatgtgcttcaaccactctttg |
12811874 |
T |
|
| Q |
218 |
ctttgaacttgccatgccaatccctataaatacccttcaacttctccaattataaaccaagctctagttttttgggagttcaccttcaaagctcaatctc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12811875 |
ctttgaacttgccatgccaatccctataaatacccttcaacttctccaattataaaccaagctctagttttttgggagttcaccttcaaagctcaatctc |
12811974 |
T |
|
| Q |
318 |
atggcttctatacatagagttcccattgttgctttctcagtactactggctttaagtttatgttctgctagaagggctctactcacttttgatgccggag |
417 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12811975 |
atggcttctatacatagaattcccattgttgctttcttagtactactggctttaagtttatgttctgctagaagggctctactcacttttgatgccggag |
12812074 |
T |
|
| Q |
418 |
gtggctatggtttaggccatggcattgttggtggaggtcatggagg |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12812075 |
gtggctatggtttaggccatggcattgttggtggaggtcatggagg |
12812120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University