View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20497_low_11 (Length: 408)
Name: NF20497_low_11
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 27498672 - 27498290
Alignment:
| Q |
18 |
gggctttcactgatggccaacggcaggccctacaaaaatccccttcggtttatgataaagaagtcttcaaggtacttcttaacttaatgagtttaatttg |
117 |
Q |
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||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27498672 |
gggctttcaatgatggccaatggcgggccctacaaaaatccccttcggtttatgacgaagaagtcttcaaggtactccttaacttaatgagtttaatttg |
27498573 |
T |
|
| Q |
118 |
tatacaccgtccacggaaaaagttttgtattgtcagcgaatcacgtcacaaccaatcaaatgaatgattttaaaagttgttacgaataaaatcaaatgtt |
217 |
Q |
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||||||| ||| || ||||||||||| ||||| || || ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27498572 |
tatacactgtcaccgtaaaaagttttgcgttgtctgcaaagcacatcacagccaattaaatgaatgattttaaaagttgttacgaataaaatcaaatgtt |
27498473 |
T |
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| Q |
218 |
tgtatgattcgatggttatggttatgattgatctacaggccttggactttgtggtaagtgaagcaaagaaatacaaaatcaggctgatattatcattggc |
317 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27498472 |
tgtatgatttgatggttatggttatgattgatctacaggccttggactttgtggtaagtgaagcaaagaaatacaaaatcaggctgatattatcattggc |
27498373 |
T |
|
| Q |
318 |
caacaattgggagtcatatggtggaaaatcacaatatgtgaaatggggcaaagatgctggccttaacttgacctctgatgatg |
400 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27498372 |
caacaattgggaggcatatggtggaaaagcacaatatgtgaaatggggcaaagatgctggccttaacttgacctctgatgatg |
27498290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 207 - 400
Target Start/End: Complemental strand, 27519954 - 27519762
Alignment:
| Q |
207 |
aatcaaatgtttgtatgattcgatggttatggttatgattgatctacaggccttggactttgtggtaagtgaagcaaagaaatacaaaatcaggctgata |
306 |
Q |
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| T |
27519954 |
aatcaaatgtttgtatgattcgatggttatggttatg-ttgatctacaggccttggactttgtggtaagtgaagcaaagaaatacaaaatcaggctgata |
27519856 |
T |
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| Q |
307 |
ttatcattggccaacaattgggagtcatatggtggaaaatcacaatatgtgaaatggggcaaagatgctggccttaacttgacctctgatgatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27519855 |
ttatcattggccaacaattgggagtcatatggtggaaaatcacaatatgtgaaatggggcaaagatgctggccttaacttgacctctgatgatg |
27519762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 27520107 - 27519946
Alignment:
| Q |
18 |
gggctttcactgatggccaacggcaggccctacaaaaatccccttcggtttatgataaagaagtcttcaaggtacttcttaacttaatgagtttaatttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27520107 |
gggctttcactgatggccaacggcaggccctacaaaaatccccttcggtttatgataaagaagtcttcaaggtactccttaacttaatgagtttaatttg |
27520008 |
T |
|
| Q |
118 |
tatacaccgtccacggaaaaagttttgtattgtcagcgaatcacgtcacaaccaatcaaatg |
179 |
Q |
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| T |
27520007 |
tatacaccgtccacggaaaaagttttgtattgtcagtgaatcacgtcacaaccaatcaaatg |
27519946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 260 - 400
Target Start/End: Original strand, 281366 - 281506
Alignment:
| Q |
260 |
tggactttgtggtaagtgaagcaaagaaatacaaaatcaggctgatattatcattggccaacaattgggagtcatatggtggaaaatcacaatatgtgaa |
359 |
Q |
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|||| |||||||| ||||||||||||||||||| |||||| || ||||||||||||| |||||||||||| |||||||||||||| |||||||||| || |
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| T |
281366 |
tggattttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcattggttaacaattgggaggcatatggtggaaaagcacaatatgtcaa |
281465 |
T |
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| Q |
360 |
atggggcaaagatgctggccttaacttgacctctgatgatg |
400 |
Q |
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||||| || | ||||||||||||||||||||||||||||| |
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| T |
281466 |
gtggggtaatgctgctggccttaacttgacctctgatgatg |
281506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 260 - 400
Target Start/End: Complemental strand, 634486 - 634346
Alignment:
| Q |
260 |
tggactttgtggtaagtgaagcaaagaaatacaaaatcaggctgatattatcattggccaacaattgggagtcatatggtggaaaatcacaatatgtgaa |
359 |
Q |
| |
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|||| |||||||| ||||||||||||||||||| |||||| || ||||||||||||| |||||||||||| |||||||||||||| |||||||||| || |
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| T |
634486 |
tggattttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcattggttaacaattgggaggcatatggtggaaaagcacaatatgtcaa |
634387 |
T |
|
| Q |
360 |
atggggcaaagatgctggccttaacttgacctctgatgatg |
400 |
Q |
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| T |
634386 |
gtggggtaatgctgctggccttaacttgacctctgatgatg |
634346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 260 - 400
Target Start/End: Complemental strand, 820289 - 820149
Alignment:
| Q |
260 |
tggactttgtggtaagtgaagcaaagaaatacaaaatcaggctgatattatcattggccaacaattgggagtcatatggtggaaaatcacaatatgtgaa |
359 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |||||| || ||||||||||||| |||||||||||| |||||||||||||| |||||||||| || |
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| T |
820289 |
tggattttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcattggttaacaattgggaggcatatggtggaaaagcacaatatgtcaa |
820190 |
T |
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| Q |
360 |
atggggcaaagatgctggccttaacttgacctctgatgatg |
400 |
Q |
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||||| || | ||||||||||||||||||||||||||||| |
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| T |
820189 |
gtggggtaatgctgctggccttaacttgacctctgatgatg |
820149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 53029346 - 53029290
Alignment:
| Q |
166 |
caaccaatcaaatgaatgattttaaaagttg-ttacgaataaaatcaaatgtttgta |
221 |
Q |
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|||||||||||||||||| |||||||||| | ||| ||||||| ||||||||||||| |
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| T |
53029346 |
caaccaatcaaatgaatggttttaaaagtagtttaagaataaagtcaaatgtttgta |
53029290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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