View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20497_low_13 (Length: 405)

Name: NF20497_low_13
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20497_low_13
NF20497_low_13
[»] chr1 (1 HSPs)
chr1 (24-396)||(5921417-5921789)
[»] chr8 (2 HSPs)
chr8 (32-197)||(12590790-12590958)
chr8 (160-254)||(31906985-31907079)
[»] chr6 (15 HSPs)
chr6 (28-173)||(29470056-29470201)
chr6 (32-197)||(28489673-28489841)
chr6 (32-197)||(29673039-29673207)
chr6 (32-197)||(29802083-29802251)
chr6 (101-213)||(28236420-28236532)
chr6 (25-68)||(26960922-26960965)
chr6 (103-213)||(28244794-28244904)
chr6 (25-66)||(26951593-26951634)
chr6 (158-235)||(28187369-28187446)
chr6 (32-65)||(29721980-29722013)
chr6 (167-259)||(2186816-2186908)
chr6 (25-65)||(26979232-26979272)
chr6 (101-213)||(28295895-28296007)
chr6 (101-213)||(28516066-28516178)
chr6 (84-132)||(29757945-29757993)
[»] scaffold0007 (1 HSPs)
scaffold0007 (99-197)||(73444-73542)
[»] scaffold0038 (2 HSPs)
scaffold0038 (101-213)||(36582-36694)
scaffold0038 (103-213)||(44956-45066)
[»] chr2 (1 HSPs)
chr2 (147-186)||(17991376-17991415)
[»] scaffold0019 (1 HSPs)
scaffold0019 (101-213)||(56458-56570)
[»] scaffold0012 (1 HSPs)
scaffold0012 (84-132)||(211097-211145)


Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 24 - 396
Target Start/End: Complemental strand, 5921789 - 5921417
Alignment:
24 gtgttaaaagggaacaagtaaaattgaaatcatatatttggattcctccattgaagtaaaatgggatgaagaggctttcaagaagatggaaaacctcaga 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5921789 gtgttaaaagggaacaagtaaaattgaaatcatatatttggattcctccattgaagtaaaatgggatgaagaggctttcaagaagatggaaaacctcaga 5921690  T
124 acgctaattattaggcatggtgctttttctgaaagtcccaaatatcttccaaatagtttgagaatgctggaatggcggaaatatccttcaggaggtgtac 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
5921689 acgctaattattaggcatggtgctttttctgaaagtcccaaatatcttccaaatagtttgagaattctggaatggcggaaatatccttcaggaggtgtac 5921590  T
224 catctgatttttatcccaagaaacttgccatctgcaaaattgcctttgactttacatcatttgtgtggggagatttcttaaagaaggcaagtttgatgaa 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
5921589 catctgatttttatcccaagaaacttgccatctgcaaaattgcctttgactttacatcatttgtgtggggagatttcttaaagaaggcaagtgtgatgaa 5921490  T
324 ttttatatcccccatcttatatcaataaattactcgaatattaatccattcttactagtttgacagttcttct 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
5921489 ttttatatcccccatcttatatcaataaattactcgaatattaatccattcttactagtttggctgttcttct 5921417  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 32 - 197
Target Start/End: Original strand, 12590790 - 12590958
Alignment:
32 agggaacaagtaaaattgaaatcatatatttggattcctccattgaagtaaaatgggatgaagaggctttcaagaagatggaaaacctcagaacgctaat 131  Q
    |||||||||||||||||||||||||| |||||||||  || |||  |||| ||||||||||||| |||||||||||||||||||| |||| ||| |||||    
12590790 agggaacaagtaaaattgaaatcatacatttggattgttctattagagtagaatgggatgaagaagctttcaagaagatggaaaatctcaaaacactaat 12590889  T
132 tattag---gcatggtgctttttctgaaagtcccaaatatcttccaaatagtttgagaatgctggaatg 197  Q
    | ||||     ||| | |||||||| ||| ||||||| |||||||||||||| | ||| || |||||||    
12590890 ttttagtaaagatgtttctttttctaaaaatcccaaacatcttccaaatagtctaagagtgttggaatg 12590958  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 254
Target Start/End: Original strand, 31906985 - 31907079
Alignment:
160 cccaaatatcttccaaatagtttgagaatgctggaatggcggaaatatccttcaggaggtgtaccatctgatttttatcccaagaaacttgccat 254  Q
    |||||| |||||||||||||||| ||| |  |||||||| |||| |||||||||| |  | | |||| ||||||| |||| ||||||||||||||    
31906985 cccaaacatcttccaaatagtttaagagtagtggaatggtggaattatccttcagaatattttccatatgattttaatccaaagaaacttgccat 31907079  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 29470056 - 29470201
Alignment:
28 taaaagggaacaagtaaaattgaaatcatatatttggattcctccattgaagtaaaatgggatgaagaggctttcaagaagatggaaaacctcagaacgc 127  Q
    ||||||||||||||||||||||||||||||| |      |||   ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
29470056 taaaagggaacaagtaaaattgaaatcatatgtccaagctcccggattgaagtagaatgggatgaagaggctttcaagaagatggaaaacctcagaacac 29470155  T
128 taattattaggcatggtgctttttctgaaagtcccaaatatcttcc 173  Q
    ||||||||| | ||||    ||| |||| ||||||||| |||||||    
29470156 taattattatggatggccaatttactgagagtcccaaaaatcttcc 29470201  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 28489841 - 28489673
Alignment:
32 agggaacaagtaaaattgaaatcatatatttggattcctccattgaagtaaaatgggatgaagaggctttcaagaagatggaaaacctcagaacgctaat 131  Q
    ||||||||||||||||||||||||||||||| ||    |  |||  |||| ||||||||| ||| |||||||||||||||||||| |||| ||| || ||    
28489841 agggaacaagtaaaattgaaatcatatatttcgaccgttggattagagtagaatgggatggagaagctttcaagaagatggaaaatctcaaaacactcat 28489742  T
132 tattaggcatggtgct---ttttctgaaagtcccaaatatcttccaaatagtttgagaatgctggaatg 197  Q
    | ||||  ||| || |   |||||| ||| ||||||| |||||||||||||| | ||| || |||||||    
28489741 ttttagtaatgatgttttcttttctaaaaatcccaaacatcttccaaatagtctaagagtgttggaatg 28489673  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 29673207 - 29673039
Alignment:
32 agggaacaagtaaaattgaaatcatatatttggattcctccattgaagtaaaatgggatgaagaggctttcaagaagatggaaaacctcagaacgctaat 131  Q
    |||||||||||||||||||||| ||| |||| ||       ||||||||| ||||||||| ||| |||||||||||||||||||| |||| ||| || ||    
29673207 agggaacaagtaaaattgaaatgatacatttcgacggtgtgattgaagtacaatgggatggagaagctttcaagaagatggaaaatctcaaaacactcat 29673108  T
132 tattaggcatggtg---ctttttctgaaagtcccaaatatcttccaaatagtttgagaatgctggaatg 197  Q
    | ||||  ||| ||    ||||||||||| ||||||| |||||||||||||| | ||| || |||||||    
29673107 ttttagtaatgatgtttttttttctgaaaatcccaaacatcttccaaatagtctaagagtgttggaatg 29673039  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 29802251 - 29802083
Alignment:
32 agggaacaagtaaaattgaaatcatatatttggattcctccattgaagtaaaatgggatgaagaggctttcaagaagatggaaaacctcagaacgctaat 131  Q
    ||||||||||||||||||||||||||||||| ||    |  |||  |||| ||||||||| ||| |||||||||||||||||||| |||| ||| || ||    
29802251 agggaacaagtaaaattgaaatcatatatttcgaccgttggattagagtagaatgggatggagaagctttcaagaagatggaaaatctcaaaacactcat 29802152  T
132 tattaggcatggtgct---ttttctgaaagtcccaaatatcttccaaatagtttgagaatgctggaatg 197  Q
    | ||||  ||| || |   |||||| ||| ||||||| |||||||||||||| | ||| || |||||||    
29802151 ttttagtaatgatgttttcttttctaaaaatcccaaacatcttccaaatagtctaagagtgttggaatg 29802083  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 28236420 - 28236532
Alignment:
101 tcaagaagatggaaaacctcagaacgctaattattaggcatggtgctttttctgaaagtcccaaatatcttccaaatagtttgagaatgctggaatggcg 200  Q
    ||||||||||| ||||||||| ||| || ||| ||| | ||||| | |||||  || |||| || |||||||| |||||||||||| |  |||||||||     
28236420 tcaagaagatgcaaaacctcaaaacacttattgttaagaatggtaccttttccaaaggtcctaattatcttcctaatagtttgagagtattggaatggcc 28236519  T
201 gaaatatccttca 213  Q
     ||||||||||||    
28236520 taaatatccttca 28236532  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 26960922 - 26960965
Alignment:
25 tgttaaaagggaacaagtaaaattgaaatcatatatttggattc 68  Q
    |||||||||||||| |||||||||||||| ||||||||| ||||    
26960922 tgttaaaagggaactagtaaaattgaaatgatatatttgaattc 26960965  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 28244794 - 28244904
Alignment:
103 aagaagatggaaaacctcagaacgctaattattaggcatggtgctttttctgaaagtcccaaatatcttccaaatagtttgagaatgctggaatggcgga 202  Q
    ||||||||||||||||||| ||| || ||| ||| | ||||| | |||||  |  |||| |||||||||||||| ||| ||||| |  |||||||||  |    
28244794 aagaagatggaaaacctcaaaacacttattgttaagaatggtaccttttccaatggtccaaaatatcttccaaacagtctgagagtattggaatggccta 28244893  T
203 aatatccttca 213  Q
    |||||||||||    
28244894 aatatccttca 28244904  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 26951593 - 26951634
Alignment:
25 tgttaaaagggaacaagtaaaattgaaatcatatatttggat 66  Q
    |||||||||||||| |||||||||||||| |||||| |||||    
26951593 tgttaaaagggaactagtaaaattgaaatgatatatctggat 26951634  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 28187369 - 28187446
Alignment:
158 gtcccaaatatcttccaaatagtttgagaatgctggaatggcggaaatatccttcaggaggtgtaccatctgattttt 235  Q
    |||| |||||||||||||| ||||||||| |  |||||||||  |||||||||||| | |   |||||||||||||||    
28187369 gtccaaaatatcttccaaacagtttgagagtattggaatggcaaaaatatccttcacgggtcataccatctgattttt 28187446  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 29722013 - 29721980
Alignment:
32 agggaacaagtaaaattgaaatcatatatttgga 65  Q
    |||||||||||||||||||||||||| |||||||    
29722013 agggaacaagtaaaattgaaatcatacatttgga 29721980  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 2186816 - 2186908
Alignment:
167 atcttccaaatagtttgagaatgctggaatggcggaaatatccttcaggaggtgtaccatctgatttttatcccaagaaacttgccatctgca 259  Q
    ||||||||||| |||||||| ||||||| ||||  ||||| |||||||    | ||||||||||||||| ||| | ||||||| |||| ||||    
2186816 atcttccaaatggtttgagagtgctggattggcctaaatacccttcagagaatttaccatctgatttttttccaaggaaactttccatatgca 2186908  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 26979232 - 26979272
Alignment:
25 tgttaaaagggaacaagtaaaattgaaatcatatatttgga 65  Q
    |||||||||||||| |||||||||||||| |||||| ||||    
26979232 tgttaaaagggaactagtaaaattgaaatgatatatctgga 26979272  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 28296007 - 28295895
Alignment:
101 tcaagaagatggaaaacctcagaacgctaattattaggcatggtgctttttctgaaagtcccaaatatcttccaaatagtttgagaatgctggaatggcg 200  Q
    ||||||||||| ||||||||| ||| || ||| ||| | |||||   |||||  || |||| ||||||||||| || ||||||||| |  |||||||||     
28296007 tcaagaagatgcaaaacctcaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgagagtattggaatggcc 28295908  T
201 gaaatatccttca 213  Q
     ||||||||||||    
28295907 taaatatccttca 28295895  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 28516066 - 28516178
Alignment:
101 tcaagaagatggaaaacctcagaacgctaattattaggcatggtgctttttctgaaagtcccaaatatcttccaaatagtttgagaatgctggaatggcg 200  Q
    ||||||||||| ||||||||| ||| || ||| ||| | |||||   |||||  || |||| ||||||||||| || ||||||||| |  |||||||||     
28516066 tcaagaagatgcaaaacctcaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgagagtattggaatggcc 28516165  T
201 gaaatatccttca 213  Q
     ||||||||||||    
28516166 taaatatccttca 28516178  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 29757993 - 29757945
Alignment:
84 atgggatgaagaggctttcaagaagatggaaaacctcagaacgctaatt 132  Q
    |||||||| ||| |||||||||||||||||||| |||| ||| ||||||    
29757993 atgggatggagaagctttcaagaagatggaaaatctcaaaacactaatt 29757945  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 73444 - 73542
Alignment:
99 tttcaagaagatggaaaacctcagaacgctaattattaggcatggtgctttttctgaaagtcccaaatatcttccaaatagtttgagaatgctggaatg 197  Q
    |||||||||||||||||| |||| ||| |||||| |||||||||  | |||||||||||  |  ||| |||||||||||||| | ||| || |||||||    
73444 tttcaagaagatggaaaatctcaaaacactaattcttaggcatgtcgatttttctgaaatccagaaacatcttccaaatagtctaagagtgttggaatg 73542  T

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Target: scaffold0038 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 36582 - 36694
Alignment:
101 tcaagaagatggaaaacctcagaacgctaattattaggcatggtgctttttctgaaagtcccaaatatcttccaaatagtttgagaatgctggaatggcg 200  Q
    ||||||||||| ||||||||| ||| || ||| ||| | ||||| | |||||  || |||| || |||||||| |||||||||||| |  |||||||||     
36582 tcaagaagatgcaaaacctcaaaacacttattgttaagaatggtaccttttccaaaggtcctaattatcttcctaatagtttgagagtattggaatggcc 36681  T
201 gaaatatccttca 213  Q
     ||||||||||||    
36682 taaatatccttca 36694  T

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Target: scaffold0038; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 44956 - 45066
Alignment:
103 aagaagatggaaaacctcagaacgctaattattaggcatggtgctttttctgaaagtcccaaatatcttccaaatagtttgagaatgctggaatggcgga 202  Q
    ||||||||||||||||||| ||| || ||| ||| | ||||| | |||||  |  |||| |||||||||||||| ||| ||||| |  |||||||||  |    
44956 aagaagatggaaaacctcaaaacacttattgttaagaatggtaccttttccaatggtccaaaatatcttccaaacagtctgagagtattggaatggccta 45055  T
203 aatatccttca 213  Q
    |||||||||||    
45056 aatatccttca 45066  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 17991415 - 17991376
Alignment:
147 tttttctgaaagtcccaaatatcttccaaatagtttgaga 186  Q
    |||||||||| ||||||| |||||||||||||||||||||    
17991415 tttttctgaaggtcccaagtatcttccaaatagtttgaga 17991376  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 56570 - 56458
Alignment:
101 tcaagaagatggaaaacctcagaacgctaattattaggcatggtgctttttctgaaagtcccaaatatcttccaaatagtttgagaatgctggaatggcg 200  Q
    ||||||||||| ||||||||| ||| || ||| ||| | |||||   |||||  || |||| ||| ||||||| || ||||||||| |  ||||||||||    
56570 tcaagaagatgcaaaacctcaaaacacttattgttaagaatggtagcttttccaaaggtcctaaacatcttcctaacagtttgagagtattggaatggcg 56471  T
201 gaaatatccttca 213  Q
     ||||||||||||    
56470 taaatatccttca 56458  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 211145 - 211097
Alignment:
84 atgggatgaagaggctttcaagaagatggaaaacctcagaacgctaatt 132  Q
    |||||||| ||| |||||||||||||||||||| |||| ||| ||||||    
211145 atgggatggagaagctttcaagaagatggaaaatctcaaaacactaatt 211097  T

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