View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20497_low_15 (Length: 380)
Name: NF20497_low_15
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 362
Target Start/End: Complemental strand, 25559339 - 25558986
Alignment:
| Q |
14 |
atatgtgttcctttaaattttaaaaacccacaaagtactttaaaattttaaaattattgttatgaatctattgaaatccatgagtaattttttattttac |
113 |
Q |
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| T |
25559339 |
atatgcgttcctttaaattttaaaaacccgcaaaatacttaaaaaatttaaaattactgttatgaatctattgaaatccatgagtaattttttattttac |
25559240 |
T |
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| Q |
114 |
aattccaatgttattcgatgtactcttttaattgtttaattttct-----agnnnnnnnncatgttttaatannnnnnnctcatccaaacgaaaaaatat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| |
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| T |
25559239 |
aattccaatgttattcgatgtactcttttaattgtttaattttctaaaacaaaaaaaaaacatgttttaatatttttttctcatccaaacgaaaaaatat |
25559140 |
T |
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| Q |
209 |
caaccttgtttttactttaaaatgatttgaacaaagacaattactattcacacctcaataaaatacttttaaaatgnnnnnnnnnnttcaatctaatcaa |
308 |
Q |
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| T |
25559139 |
ctaccttgtttttactttaaaatgatttgaacaaagacaattactattcagacctcaataaaatacttttaaaatgaaataaaattttcaatctaatcaa |
25559040 |
T |
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| Q |
309 |
aatcttgcacttgtttctcgggtacatctcaaatcatttcagcgctcgcaaact |
362 |
Q |
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| T |
25559039 |
aatcttgcacttgtttctcgggtacatctcaaatcatttcagcgcttgcaaact |
25558986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 362
Target Start/End: Original strand, 2776646 - 2777000
Alignment:
| Q |
14 |
atatgtgttcctttaaattttaaaaacccacaaagtactttaaaattttaaaattattgttatgaatctattgaaatccatgagtaattttttattttac |
113 |
Q |
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| T |
2776646 |
atatgtgttcctttaaattttaaaaacccgcaaagtattttaaaattttaaaaatactg-----aatctattgaaatccatgagtaattttttattttac |
2776740 |
T |
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| Q |
114 |
aattccaatgttattcgatgtactcttttaattgtttaattttctagnnnnnnnncatgttttaata---nnnnnnnctcatccaaacg-aaaaaatatc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||| |||| | |||||| ||| |
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| T |
2776741 |
aattccaatgttattcgatgtactcttttaattgtttaattttctaggaaaaaatcgtgttttaatattttttttttctcattcaaatgaaaaaaaaatc |
2776840 |
T |
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| Q |
210 |
aaccttgtttttactttaaaatgatttgaacaaagacaattactattcacacctcaataaaatacttttaaaatgnnnnnnnnnnttcaatctaatcaaa |
309 |
Q |
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| T |
2776841 |
gaccttgtttctcctttaaaacgactagaacaaagataattactattcatacctcaataaaatatttttaaaatgaaataaaattttcaatgtaatcaaa |
2776940 |
T |
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| Q |
310 |
atcttgcacttgtttctc-------gggtacatctcaaatcatttcagcgctcgcaaact |
362 |
Q |
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| T |
2776941 |
atcttgcacttgttcctcacgttttgggtacatctcaaatcatttcagcgctcacaaact |
2777000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 43278259 - 43278319
Alignment:
| Q |
28 |
aaattttaaaaacccacaaagtactttaaaattttaaaattat-tgttatgaatctattga |
87 |
Q |
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|||||||| |||||||||||||||||| |||| |||||| ||| |||||| |||| ||||| |
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| T |
43278259 |
aaattttataaacccacaaagtactttgaaatcttaaaaatatatgttataaatccattga |
43278319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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